QSPRmodeler - An open source application for molecular predictive analytics

The drug design process can be successfully supported using a variety of <i>in silico</i> methods. Some of these are oriented toward molecular property prediction, which is a key step in the early drug discovery stage. Before experimental validation, drug candidates are usually compared with known experimental data. Technically, this can be achieved using machine learning approaches, in which selected experimental data are used to train the predictive models. The proposed Python software is designed for this purpose. It supports the entire workflow of molecular data processing, starting from raw data preparation followed by molecular descriptor creation and machine learning model training. The predictive capabilities of the resulting models were carefully validated internally and externally. These models can be easily applied to new compounds, including within more complex workflows involving generative approaches.

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Publication Details

Journal
Frontiers in Bioinformatics
Published
2024-09-23
DOI
https://doi.org/10.3389/fbinf.2024.1441024
Citations
1
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
0.36
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article

QSPRmodeler - An open source application for molecular predictive analytics

Rafał A. Bachorz, Damian Nowak, Marcin Ratajewski
1 citations
Frontiers in Bioinformatics
Computational Drug Discovery Methods
0.36
article

QSPRmodeler - An open source application for molecular predictive analytics

Rafał A. Bachorz, Damian Nowak, Marcin Ratajewski
article en
1 citations

Abstract

The drug design process can be successfully supported using a variety of <i>in silico</i> methods. Some of these are oriented toward molecular property prediction, which is a key step in the early drug discovery stage. Before experimental validation, drug candidates are usually compared with known experimental data. Technically, this can be achieved using machine learning approaches, in which selected experimental data are used to train the predictive models. The proposed Python software is designed for this purpose. It supports the entire workflow of molecular data processing, starting from raw data preparation followed by molecular descriptor creation and machine learning model training. The predictive capabilities of the resulting models were carefully validated internally and externally. These models can be easily applied to new compounds, including within more complex workflows involving generative approaches.

Frontiers in BioinformaticsVol. 4
Institute for Medical Biology (PL), Adam Mickiewicz University in Poznań (PL), Polish Academy of Sciences (PL)
Openalex Percentile: Top 36%
Computational Drug Discovery Methods
0.36
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QSPRmodeler - An open source application for molecular predictive analytics — Rafał A. Bachorz, Damian Nowak, et al. · Frontiers in Bioinformatics (2024) | TGRS Research Map | TGRS