Paralimibaculum aggregatum gen. nov. sp. nov. and Biformimicrobium ophioploci gen. nov. sp. nov., two novel heterotrophs from brittle star Ophioplocus japonicus
Two novel Gram-stain-negative, strictly aerobic, halophilic and non-motile bacterial strains, designated NKW23<sup>T</sup> and NKW57<sup>T</sup>, were isolated from a brittle star <i>Ophioplocus japonicus</i> collected from a tidal pool in Wakayama, Japan. The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that NKW23<sup>T</sup> represented a member of the family <i>Paracoccaceae</i>, with <i>Limibaculum halophilum</i> CAU 1123<sup>T</sup> as its closest relative (94.4% sequence identity). NKW57<sup>T</sup> was identified as representing a member of the family <i>Microbulbiferaceae,</i> with up to 94.9% sequence identity with its closest relatives. Both strains displayed average nucleotide identity (ANI) and digital DNA-DNA hybridisation (dDDH) values below the species delimitation threshold against their closest relatives. Additionally, amino acid identity (AAI) values of both strains fell below the genus-defining threshold. Phylogenetic trees based on genome sequences indicated that NKW23<sup>T</sup> formed a novel lineage, branching deeply prior to the divergence of the genera <i>Limibaculum</i> and <i>Thermohalobaculum,</i> with an evolutionary distance (ED) of 0.31-0.32, indicative of genus-level differentiation. NKW57<sup>T</sup> similarly formed a distinct lineage separate from the species of the genus <i>Microbulbifer</i>. The major respiratory quinones of NKW23<sup>T</sup> and NKW57<sup>T</sup> were ubiquinone-10 (Q-10) and Q-8, respectively. The genomic DNA G+C contents of NKW23<sup>T</sup> and NKW57<sup>T</sup> were 71.4 and 58.8%, respectively. On the basis of the physiological and phylogenetic characteristics, it was proposed that these strains should be classified as novel species representing two novel genera: <i>Paralimibaculum aggregatum</i> gen. nov., sp. nov., with strain NKW23<sup>T</sup> (=JCM 36220<sup>T</sup>=KCTC 8062<sup>T</sup>) as the type strain, and <i>Biformimicrobium ophioploci</i> gen. nov., sp. nov., with strain NKW57<sup>T</sup> (=JCM 36221<sup>T</sup>=KCTC 8063<sup>T</sup>) as the type strain.
Authors
- Shigeki Sawayama (ORCID: https://orcid.org/0000-0002-9405-4469)
- Tatsuya Awano (ORCID: https://orcid.org/0000-0002-4735-4506)
- Arata Yoshinaga (ORCID: https://orcid.org/0000-0002-2935-3067)
- Satoshi Nakagawa (ORCID: https://orcid.org/0000-0003-0215-8154)
- Keisuke Kawano (ORCID: https://orcid.org/0000-0001-6644-1405)
- Junji Sugiyama (ORCID: https://orcid.org/0000-0002-5388-4925)
Institutions
- Japan Agency for Marine-Earth Science and Technology (JP)
- National Institutes of Natural Sciences (JP)
- Kyoto University (JP)
- The Exploratory Research Center on Life and Living Systems (JP)
Publication Details
- Journal
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Published
- 2024-09-26
- DOI
- https://doi.org/10.1099/ijsem.0.006530
- Citations
- 1
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.23
Funders
- Hebrew University of Jerusalem
- Japan Society for the Promotion of Science