Paralimibaculum aggregatum gen. nov. sp. nov. and Biformimicrobium ophioploci gen. nov. sp. nov., two novel heterotrophs from brittle star Ophioplocus japonicus

Two novel Gram-stain-negative, strictly aerobic, halophilic and non-motile bacterial strains, designated NKW23<sup>T</sup> and NKW57<sup>T</sup>, were isolated from a brittle star <i>Ophioplocus japonicus</i> collected from a tidal pool in Wakayama, Japan. The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that NKW23<sup>T</sup> represented a member of the family <i>Paracoccaceae</i>, with <i>Limibaculum halophilum</i> CAU 1123<sup>T</sup> as its closest relative (94.4% sequence identity). NKW57<sup>T</sup> was identified as representing a member of the family <i>Microbulbiferaceae,</i> with up to 94.9% sequence identity with its closest relatives. Both strains displayed average nucleotide identity (ANI) and digital DNA-DNA hybridisation (dDDH) values below the species delimitation threshold against their closest relatives. Additionally, amino acid identity (AAI) values of both strains fell below the genus-defining threshold. Phylogenetic trees based on genome sequences indicated that NKW23<sup>T</sup> formed a novel lineage, branching deeply prior to the divergence of the genera <i>Limibaculum</i> and <i>Thermohalobaculum,</i> with an evolutionary distance (ED) of 0.31-0.32, indicative of genus-level differentiation. NKW57<sup>T</sup> similarly formed a distinct lineage separate from the species of the genus <i>Microbulbifer</i>. The major respiratory quinones of NKW23<sup>T</sup> and NKW57<sup>T</sup> were ubiquinone-10 (Q-10) and Q-8, respectively. The genomic DNA G+C contents of NKW23<sup>T</sup> and NKW57<sup>T</sup> were 71.4 and 58.8%, respectively. On the basis of the physiological and phylogenetic characteristics, it was proposed that these strains should be classified as novel species representing two novel genera: <i>Paralimibaculum aggregatum</i> gen. nov., sp. nov., with strain NKW23<sup>T</sup> (=JCM 36220<sup>T</sup>=KCTC 8062<sup>T</sup>) as the type strain, and <i>Biformimicrobium ophioploci</i> gen. nov., sp. nov., with strain NKW57<sup>T</sup> (=JCM 36221<sup>T</sup>=KCTC 8063<sup>T</sup>) as the type strain.

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2024-09-26
DOI
https://doi.org/10.1099/ijsem.0.006530
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1
Primary Topic
Genomics and Phylogenetic Studies
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Paralimibaculum aggregatum gen. nov. sp. nov. and Biformimicrobium ophioploci gen. nov. sp. nov., two novel heterotrophs from brittle star Ophioplocus japonicus

Shigeki Sawayama, Tatsuya Awano, Arata Yoshinaga, Satoshi Nakagawa et al.
1 citations
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
0.23
article

Paralimibaculum aggregatum gen. nov. sp. nov. and Biformimicrobium ophioploci gen. nov. sp. nov., two novel heterotrophs from brittle star Ophioplocus japonicus

Shigeki Sawayama, Tatsuya Awano, Arata Yoshinaga, Satoshi Nakagawa, Keisuke Kawano, Junji Sugiyama
article en
1 citations

Abstract

Two novel Gram-stain-negative, strictly aerobic, halophilic and non-motile bacterial strains, designated NKW23<sup>T</sup> and NKW57<sup>T</sup>, were isolated from a brittle star <i>Ophioplocus japonicus</i> collected from a tidal pool in Wakayama, Japan. The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that NKW23<sup>T</sup> represented a member of the family <i>Paracoccaceae</i>, with <i>Limibaculum halophilum</i> CAU 1123<sup>T</sup> as its closest relative (94.4% sequence identity). NKW57<sup>T</sup> was identified as representing a member of the family <i>Microbulbiferaceae,</i> with up to 94.9% sequence identity with its closest relatives. Both strains displayed average nucleotide identity (ANI) and digital DNA-DNA hybridisation (dDDH) values below the species delimitation threshold against their closest relatives. Additionally, amino acid identity (AAI) values of both strains fell below the genus-defining threshold. Phylogenetic trees based on genome sequences indicated that NKW23<sup>T</sup> formed a novel lineage, branching deeply prior to the divergence of the genera <i>Limibaculum</i> and <i>Thermohalobaculum,</i> with an evolutionary distance (ED) of 0.31-0.32, indicative of genus-level differentiation. NKW57<sup>T</sup> similarly formed a distinct lineage separate from the species of the genus <i>Microbulbifer</i>. The major respiratory quinones of NKW23<sup>T</sup> and NKW57<sup>T</sup> were ubiquinone-10 (Q-10) and Q-8, respectively. The genomic DNA G+C contents of NKW23<sup>T</sup> and NKW57<sup>T</sup> were 71.4 and 58.8%, respectively. On the basis of the physiological and phylogenetic characteristics, it was proposed that these strains should be classified as novel species representing two novel genera: <i>Paralimibaculum aggregatum</i> gen. nov., sp. nov., with strain NKW23<sup>T</sup> (=JCM 36220<sup>T</sup>=KCTC 8062<sup>T</sup>) as the type strain, and <i>Biformimicrobium ophioploci</i> gen. nov., sp. nov., with strain NKW57<sup>T</sup> (=JCM 36221<sup>T</sup>=KCTC 8063<sup>T</sup>) as the type strain.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 74(9)
Japan Agency for Marine-Earth Science and Technology (JP), National Institutes of Natural Sciences (JP), Kyoto University (JP), The Exploratory Research Center on Life and Living Systems (JP)
Hebrew University of Jerusalem, Japan Society for the Promotion of Science
Life below water
Openalex Percentile: Top 42%
Genomics and Phylogenetic Studies
0.23
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