NR0B2 Is a Key Factor for Gastric Diseases: A GEO Database Analysis Combined with Drug-Target Mendelian Randomization

Small Heterodimer Partner (SHP; <i>NR0B2</i>) is an orphan receptor that acts as a transcriptional regulator, controlling various metabolic processes, and is a potential therapeutic target for cancer. Examining the correlation between the expression of <i>NR0B2</i> and the risk of gastric diseases could open a new path for treatment and drug development. The Gene Expression Omnibus (GEO) database was utilized to explore <i>NR0B2</i> gene expression profiles in gastric diseases. Co-expressed genes were identified through Weighted Correlation Network Analysis (WGCNA), and GO enrichment was performed to identify potential pathways. The Xcell method was employed to analyze immune infiltration relationships. To determine the potential causal relationship between <i>NR0B2</i> expression and gastric diseases, we identified six single-nucleotide polymorphisms (SNPs) as a proxy for <i>NR0B2</i> expression located within 100 kilobases of <i>NR0B2</i> and which are associated with triglyceride homeostasis and performed drug-target Mendelian randomization (MR). Bioinformatics analysis revealed that <i>NR0B2</i> expression levels were reduced in gastric cancer and increased in gastritis. GO analysis and Gene Set Enrichment Analysis (GSEA) showed that <i>NR0B2</i> is widely involved in oxidation-related processes. Immune infiltration analyses found that <i>NR0B2</i> was associated with Treg. Prognostic analyses showed that a low expression of <i>NR0B2</i> is a risk factor for the poor prognoses of gastric cancer. MR analyses revealed that <i>NR0B2</i> expression is associated with a risk of gastric diseases (<i>NR0B2</i> vs. gastric cancer, <i>p</i> = 0.006, OR: 0.073, 95%CI: 0.011-0.478; <i>NR0B2</i> vs. gastric ulcer, <i>p</i> = 0.03, OR: 0.991, 95%CI: 0.984-0.999; <i>NR0B2</i> vs. other gastritis, <i>p</i> = 0.006, OR:3.82, 95%CI: 1.468-9.942). Our study confirms the causal relationship between the expression of <i>NR0B2</i> and the risk of gastric diseases, and highlights its role in the progression of gastric cancer. The present study opens new avenues for exploring the potential of drugs that either activate or inhibit the <i>NR0B2</i> receptor in the treatment of gastric diseases.

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Journal
Genes
Published
2024-09-16
DOI
https://doi.org/10.3390/genes15091210
Primary Topic
Drug Transport and Resistance Mechanisms
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article
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article

NR0B2 Is a Key Factor for Gastric Diseases: A GEO Database Analysis Combined with Drug-Target Mendelian Randomization

Zhengwen Li, Dongliang Huang, Ming Zhang, Guido R.M.M. Haenen et al.
Genes
Drug Transport and Resistance Mechanisms
article

NR0B2 Is a Key Factor for Gastric Diseases: A GEO Database Analysis Combined with Drug-Target Mendelian Randomization

Zhengwen Li, Dongliang Huang, Ming Zhang, Guido R.M.M. Haenen, Lijia Xu, Chujie Li
article en

Abstract

Small Heterodimer Partner (SHP; <i>NR0B2</i>) is an orphan receptor that acts as a transcriptional regulator, controlling various metabolic processes, and is a potential therapeutic target for cancer. Examining the correlation between the expression of <i>NR0B2</i> and the risk of gastric diseases could open a new path for treatment and drug development. The Gene Expression Omnibus (GEO) database was utilized to explore <i>NR0B2</i> gene expression profiles in gastric diseases. Co-expressed genes were identified through Weighted Correlation Network Analysis (WGCNA), and GO enrichment was performed to identify potential pathways. The Xcell method was employed to analyze immune infiltration relationships. To determine the potential causal relationship between <i>NR0B2</i> expression and gastric diseases, we identified six single-nucleotide polymorphisms (SNPs) as a proxy for <i>NR0B2</i> expression located within 100 kilobases of <i>NR0B2</i> and which are associated with triglyceride homeostasis and performed drug-target Mendelian randomization (MR). Bioinformatics analysis revealed that <i>NR0B2</i> expression levels were reduced in gastric cancer and increased in gastritis. GO analysis and Gene Set Enrichment Analysis (GSEA) showed that <i>NR0B2</i> is widely involved in oxidation-related processes. Immune infiltration analyses found that <i>NR0B2</i> was associated with Treg. Prognostic analyses showed that a low expression of <i>NR0B2</i> is a risk factor for the poor prognoses of gastric cancer. MR analyses revealed that <i>NR0B2</i> expression is associated with a risk of gastric diseases (<i>NR0B2</i> vs. gastric cancer, <i>p</i> = 0.006, OR: 0.073, 95%CI: 0.011-0.478; <i>NR0B2</i> vs. gastric ulcer, <i>p</i> = 0.03, OR: 0.991, 95%CI: 0.984-0.999; <i>NR0B2</i> vs. other gastritis, <i>p</i> = 0.006, OR:3.82, 95%CI: 1.468-9.942). Our study confirms the causal relationship between the expression of <i>NR0B2</i> and the risk of gastric diseases, and highlights its role in the progression of gastric cancer. The present study opens new avenues for exploring the potential of drugs that either activate or inhibit the <i>NR0B2</i> receptor in the treatment of gastric diseases.

GenesVol. 15(9)
Hainan University (CN), Maastricht University (NL), Chengdu University (CN)
Good health and well-being
Openalex Percentile: Top 71%
Drug Transport and Resistance Mechanisms
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