AnnoMate: Exploring and annotating integrated molecular data through custom interactive visualizations

Manual review is an integral part of any study. As the cost of data generation continues to decrease, the rapid rise in large-scale multi-omic studies calls for a modular, flexible framework to perform what is currently a tedious, error-prone process. We developed <i>AnnoMate</i>, a Python-based package built with Plotly Dash that creates interactive, highly customizable dashboards for reviewing and annotating data. Its object-oriented framework enables easy development and modification of custom dashboards for specific manual review tasks. We utilized this framework to implement "reviewer" dashboards for various tasks often performed in cancer genome sequencing studies.

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Publication Details

Journal
Patterns
Published
2024-09-16
DOI
https://doi.org/10.1016/j.patter.2024.101060
Citations
1
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
1.05

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AnnoMate: Exploring and annotating integrated molecular data through custom interactive visualizations

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article

AnnoMate: Exploring and annotating integrated molecular data through custom interactive visualizations

Gad A. Getz, Conor Messer, Chen-Han Chu, Kristy Schlueter-Kuck, Mendy Miller, Samantha Van Seters
article en
1 citations

Abstract

Manual review is an integral part of any study. As the cost of data generation continues to decrease, the rapid rise in large-scale multi-omic studies calls for a modular, flexible framework to perform what is currently a tedious, error-prone process. We developed <i>AnnoMate</i>, a Python-based package built with Plotly Dash that creates interactive, highly customizable dashboards for reviewing and annotating data. Its object-oriented framework enables easy development and modification of custom dashboards for specific manual review tasks. We utilized this framework to implement "reviewer" dashboards for various tasks often performed in cancer genome sequencing studies.

PatternsVol. 5(10)
Broad Institute (US), Harvard University (US), Center for Cancer Research (US)
International Business Machines Corporation
Openalex Percentile: Top 13%
Scientific Computing and Data Management
1.05
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