AnnoMate: Exploring and annotating integrated molecular data through custom interactive visualizations
Manual review is an integral part of any study. As the cost of data generation continues to decrease, the rapid rise in large-scale multi-omic studies calls for a modular, flexible framework to perform what is currently a tedious, error-prone process. We developed <i>AnnoMate</i>, a Python-based package built with Plotly Dash that creates interactive, highly customizable dashboards for reviewing and annotating data. Its object-oriented framework enables easy development and modification of custom dashboards for specific manual review tasks. We utilized this framework to implement "reviewer" dashboards for various tasks often performed in cancer genome sequencing studies.
Authors
- Gad A. Getz (ORCID: https://orcid.org/0000-0002-0936-0753)
- Conor Messer
- Chen-Han Chu
- Kristy Schlueter-Kuck (ORCID: https://orcid.org/0000-0002-6335-168X)
- Mendy Miller (ORCID: https://orcid.org/0000-0003-2284-3191)
- Samantha Van Seters
Institutions
- Broad Institute (US)
- Harvard University (US)
- Center for Cancer Research (US)
Publication Details
- Journal
- Patterns
- Published
- 2024-09-16
- DOI
- https://doi.org/10.1016/j.patter.2024.101060
- Citations
- 1
- Primary Topic
- Scientific Computing and Data Management
- Type
- article
- Field-Weighted Citation Impact
- 1.05
Funders
- International Business Machines Corporation