Predicting Lung Cancer in Korean Never‐Smokers With Polygenic Risk Scores

In the last few decades, genome-wide association studies (GWAS) with more than 10,000 subjects have identified several loci associated with lung cancer and these loci have been used to develop novel risk prediction tools for cancer. The present study aimed to establish a lung cancer prediction model for Korean never-smokers using polygenic risk scores (PRSs); PRSs were calculated using a pruning-thresholding-based approach based on 11 genome-wide significant single nucleotide polymorphisms (SNPs). Overall, the odds ratios tended to increase as PRSs were larger, with the odds ratio of the top 5% PRSs being 1.71 (95% confidence interval: 1.31-2.23) using the 40%-60% percentile group as the reference, and the area under the curve (AUC) of the prediction model being of 0.76 (95% confidence interval: 0.747-0.774). The receiver operating characteristic (ROC) curves of the prediction model with and without PRSs as covariates were compared using DeLong's test, and a significant difference was observed. Our results suggest that PRSs can be valuable tools for predicting the risk of lung cancer.

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Publication Details

Journal
Genetic Epidemiology
Published
2024-09-23
DOI
https://doi.org/10.1002/gepi.22586
Citations
1
Primary Topic
Liver Disease Diagnosis and Treatment
Type
article
Field-Weighted Citation Impact
0.39
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article

Predicting Lung Cancer in Korean Never‐Smokers With Polygenic Risk Scores

Myung‐Ju Ahn, Sun Ha Jee, Juyeon Kim, Young Sik Park et al.
1 citations
Genetic Epidemiology
Liver Disease Diagnosis and Treatment
0.39
article

Predicting Lung Cancer in Korean Never‐Smokers With Polygenic Risk Scores

Myung‐Ju Ahn, Sun Ha Jee, Juyeon Kim, Young Sik Park, Jae‐Joon Yim, Yun‐Chul Hong, In‐Jae Oh, Sungho Won, Jin Hee Kim, Jong‐Won Kim, Youngchul Kim
article en
1 citations

Abstract

In the last few decades, genome-wide association studies (GWAS) with more than 10,000 subjects have identified several loci associated with lung cancer and these loci have been used to develop novel risk prediction tools for cancer. The present study aimed to establish a lung cancer prediction model for Korean never-smokers using polygenic risk scores (PRSs); PRSs were calculated using a pruning-thresholding-based approach based on 11 genome-wide significant single nucleotide polymorphisms (SNPs). Overall, the odds ratios tended to increase as PRSs were larger, with the odds ratio of the top 5% PRSs being 1.71 (95% confidence interval: 1.31-2.23) using the 40%-60% percentile group as the reference, and the area under the curve (AUC) of the prediction model being of 0.76 (95% confidence interval: 0.747-0.774). The receiver operating characteristic (ROC) curves of the prediction model with and without PRSs as covariates were compared using DeLong's test, and a significant difference was observed. Our results suggest that PRSs can be valuable tools for predicting the risk of lung cancer.

Genetic EpidemiologyVol. 49(1)
Seoul National University (KR), Yonsei University (KR), Samsung Medical Center (KR), New Generation University College (ET), Seoul National University Hospital (KR), Sejong University (KR), Korea Health Promotion Institute (KR), NCSOFT (South Korea) (KR), Chonnam National University Hwasun Hospital (KR), Sungkyunkwan University (KR)
Openalex Percentile: Top 34%
Liver Disease Diagnosis and Treatment
0.39
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