Proximal Sensing for Characterising Seaweed Aquaculture Crop Conditions: Optical Detection of Ice-Ice Disease

Crop monitoring is a fundamental practice in seaweed aquaculture. Seaweeds are vulnerable to several threats such as ice-ice disease (IID) causing a whitening of the thallus due to depigmentation. Crop condition assessment is important for minimizing yield losses and improving the biosecurity of seaweed farms. The recent influence of modern technology has resulted in the development of precision aquaculture. The present study focuses on the exploitation of spectral reflectance in the visible and near-infrared regions for characterizing the crop condition of two of the most cultivated Eucheumatoids species: Kappaphycus alvareezi and Eucheuma denticulatum. In particular, the influence of spectral resolution is examined towards discriminating: (a) species and morphotypes, (b) different levels of seaweed health (i.e., from healthy to completely depigmented) and (c) depigmented from silted specimens (thallus covered by a thin layer of sediment). Two spectral libraries were built at different spectral resolutions (5 and 45 spectral bands) using in situ data. In addition, proximal multispectral imagery using a drone-based sensor was utilised. At each experimental scenario, the spectral data were classified using a Random Forest algorithm for crop condition identification. The results showed good discrimination (83–99% overall accuracy) for crop conditions and morphotypes regardless of spectral resolution. According to the importance scores of the hyperspectral data, useful wavelengths were identified for discriminating healthy seaweeds from seaweeds with varying symptoms of IID (i.e., thalli whitening). These wavelengths assisted in selecting a set of vegetation indices for testing their ability to improve crop condition characterisation. Specifically, five vegetation indices (the RBNDVI, GLI, Hue, Green–Red ratio and NGRDI) were found to improve classification accuracy, making them recommended for seaweed health monitoring. Image-based classification demonstrated that multispectral library data can be extended to photomosaics to assess seaweed conditions on a broad scale. The results of this study suggest that proximal sensing is a first step towards effective seaweed crop monitoring, enhancing yield and contributing to aquaculture biosecurity.