Virgibacillus tibetensis sp. nov., isolated from salt lake on the Tibetan plateau of China

One bacterial strain, designated as C22-A2<sup>T</sup>, was isolated from Lake LungmuCo in Tibet. Cells of strain C22-A2<sup>T</sup> were long rod-shaped, Gram-stain-negative, non-spore-forming, with positive catalase and oxidase activity. Optimal growth occurred at 20-25 °C, pH 8.0 and with 3.0-7.0% (w/v) NaCl. Phylogenetic analysis of 16S rRNA gene and whole genome sequences revealed that strain C22-A2<sup>T</sup> belonged to the genus <i>Virgibacillus</i>, showing the highest 16S rRNA gene similarity to <i>Virgibacillus halodenitrificans</i> DSM 10037<sup>T</sup> (97.6%). The average nucleotide identity values between strain C22-A2<sup>T</sup> and the type strains of related species in the genus <i>Virgibacillus</i> were less than 74.4% and the digital DNA-DNA hybridization values were less than 20.2%, both below the species delineation thresholds of 95 and 70% respectively. The genome analysis revealed that strain C22-A2<sup>T</sup> harboured genes responsible for osmotic and oxidative stress, enabling it to adapt to its surrounding environment. In terms of biochemical and physiological characteristics, strain C22-A2<sup>T</sup> shared similar characteristics with the genus <i>Virgibacillus,</i> including the predominant cellular fatty acid anteiso-C<sub>15 : 0</sub>, the major respiratory quinone MK-7, as well as the polar lipids phosphatidylglycerol and diphosphatidylglycerol. Based on the comprehensive analysis of phylogenetic, phylogenomic, morphological, physiological and biochemical characteristics, strain C22-A2<sup>T</sup> is proposed to represent a novel species of the genus <i>Virgibacillus</i>, named as <i>Virgibacillus tibetensis</i> sp. nov. (=CGMCC 1.19202<sup>T</sup>=KCTC 43426<sup>T</sup>).

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Journal
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2024-09-23
DOI
https://doi.org/10.1099/ijsem.0.006525
Citations
1
Primary Topic
Genomics and Phylogenetic Studies
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article
Field-Weighted Citation Impact
0.23

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article

Virgibacillus tibetensis sp. nov., isolated from salt lake on the Tibetan plateau of China

Yanyan Zheng, Dorji Phurbu, Zi-Xuan Liu, Xuan Zhang et al.
1 citations
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
0.23
article

Virgibacillus tibetensis sp. nov., isolated from salt lake on the Tibetan plateau of China

Yanyan Zheng, Dorji Phurbu, Zi-Xuan Liu, Xuan Zhang, Rui Wang, Dongyang Li, Xue Lu, Ai-Hua Li, Yu-Guang Zhou, Ya-Jing Yu
article en
1 citations

Abstract

One bacterial strain, designated as C22-A2<sup>T</sup>, was isolated from Lake LungmuCo in Tibet. Cells of strain C22-A2<sup>T</sup> were long rod-shaped, Gram-stain-negative, non-spore-forming, with positive catalase and oxidase activity. Optimal growth occurred at 20-25 °C, pH 8.0 and with 3.0-7.0% (w/v) NaCl. Phylogenetic analysis of 16S rRNA gene and whole genome sequences revealed that strain C22-A2<sup>T</sup> belonged to the genus <i>Virgibacillus</i>, showing the highest 16S rRNA gene similarity to <i>Virgibacillus halodenitrificans</i> DSM 10037<sup>T</sup> (97.6%). The average nucleotide identity values between strain C22-A2<sup>T</sup> and the type strains of related species in the genus <i>Virgibacillus</i> were less than 74.4% and the digital DNA-DNA hybridization values were less than 20.2%, both below the species delineation thresholds of 95 and 70% respectively. The genome analysis revealed that strain C22-A2<sup>T</sup> harboured genes responsible for osmotic and oxidative stress, enabling it to adapt to its surrounding environment. In terms of biochemical and physiological characteristics, strain C22-A2<sup>T</sup> shared similar characteristics with the genus <i>Virgibacillus,</i> including the predominant cellular fatty acid anteiso-C<sub>15 : 0</sub>, the major respiratory quinone MK-7, as well as the polar lipids phosphatidylglycerol and diphosphatidylglycerol. Based on the comprehensive analysis of phylogenetic, phylogenomic, morphological, physiological and biochemical characteristics, strain C22-A2<sup>T</sup> is proposed to represent a novel species of the genus <i>Virgibacillus</i>, named as <i>Virgibacillus tibetensis</i> sp. nov. (=CGMCC 1.19202<sup>T</sup>=KCTC 43426<sup>T</sup>).

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 74(9)
Tianjin University of Commerce (CN), Chinese Academy of Sciences (CN), Institute of Microbiology (CN), Tianjin Institute of Industrial Biotechnology (CN)
National Natural Science Foundation of China
Life below water
Openalex Percentile: Top 42%
Genomics and Phylogenetic Studies
0.23
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