Amino acid-dependent phase equilibrium and material properties of tetrapeptide condensates

The rules of how amino acids dictate the physical properties of biomolecular condensates are still incomplete. Here, we study condensates formed by tetrapeptides of the form XXssXX. Eight peptides form four types of condensates at different concentrations and pHs: droplets (X = F, L, M, P, V, and A), amorphous dense liquids (X = L, M, P, V, and A), amorphous aggregates (X = W), and gels (X = I, V, and A). The peptides exhibit differences in phase equilibrium and material properties, including a 368-fold range in the threshold concentration for phase separation and a 3,856-fold range in viscosity. All-atom molecular dynamics simulations provide physical explanations of these results. The present work also reveals widespread critical behaviors-including critical slowing down manifested by amorphous dense liquids and critical scaling obeyed by fusion speed-with broad implications for condensate functions.

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Publication Details

Journal
Cell Reports Physical Science
Published
2024-09-23
DOI
https://doi.org/10.1016/j.xcrp.2024.102218
Citations
15
Primary Topic
RNA Research and Splicing
Type
article
Field-Weighted Citation Impact
3.04

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article

Amino acid-dependent phase equilibrium and material properties of tetrapeptide condensates

Siyuan Su, Huan‐Xiang Zhou, Ramesh Prasad, Yi Zhang et al.
15 citations
Cell Reports Physical Science
RNA Research and Splicing
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article

Amino acid-dependent phase equilibrium and material properties of tetrapeptide condensates

Siyuan Su, Huan‐Xiang Zhou, Ramesh Prasad, Yi Zhang, Daesung Lee
article en
15 citations

Abstract

The rules of how amino acids dictate the physical properties of biomolecular condensates are still incomplete. Here, we study condensates formed by tetrapeptides of the form XXssXX. Eight peptides form four types of condensates at different concentrations and pHs: droplets (X = F, L, M, P, V, and A), amorphous dense liquids (X = L, M, P, V, and A), amorphous aggregates (X = W), and gels (X = I, V, and A). The peptides exhibit differences in phase equilibrium and material properties, including a 368-fold range in the threshold concentration for phase separation and a 3,856-fold range in viscosity. All-atom molecular dynamics simulations provide physical explanations of these results. The present work also reveals widespread critical behaviors-including critical slowing down manifested by amorphous dense liquids and critical scaling obeyed by fusion speed-with broad implications for condensate functions.

Cell Reports Physical ScienceVol. 5(10)
University of Illinois Chicago (US)
National Institutes of Health
Openalex Percentile: Top 8%
RNA Research and Splicing
3.04
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