HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools

All our models are integrated into the Natural Language Processing (NLP) framework flair: https://github.com/flairNLP/flair. Code to reproduce our results is available at: https://github.com/hu-ner/hunflair2-experiments.

Authors

Mario Sänger (ORCID: https://orcid.org/0000-0002-2950-2587)
Xing David Wang
Alan Akbik
Leon Weber (ORCID: https://orcid.org/0000-0002-2499-472X)
Samuele Garda
Ulf Leser (ORCID: https://orcid.org/0000-0003-2166-9582)
Benedikt Fuchs
Pia Droop

Institutions

Humboldt-Universität zu Berlin (DE)
Forschungs- und Beratungsstelle Arbeitswelt (AT)
Ludwig-Maximilians-Universität München (DE)

Publication Details

Journal: Bioinformatics
Published: 2024-09-20
DOI: https://doi.org/10.1093/bioinformatics/btae564
Citations: 14
Primary Topic: Biomedical Text Mining and Ontologies
Type: article
Field-Weighted Citation Impact: 3.27

Funders

Deutsche Forschungsgemeinschaft

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article

HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools

Mario Sänger, Xing David Wang, Alan Akbik, Leon Weber et al.

Sep 20, 2024

14 citations

Bioinformatics

Biomedical Text Mining and Ontologies

3.27

article

HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools

Mario Sänger, Xing David Wang, Alan Akbik, Leon Weber, Samuele Garda, Ulf Leser, Benedikt Fuchs, Pia Droop

September 20, 2024article en

14 citations

Abstract

All our models are integrated into the Natural Language Processing (NLP) framework flair: https://github.com/flairNLP/flair. Code to reproduce our results is available at: https://github.com/hu-ner/hunflair2-experiments.

BioinformaticsVol. 40(10)

Humboldt-Universität zu Berlin (DE), Forschungs- und Beratungsstelle Arbeitswelt (AT), Ludwig-Maximilians-Universität München (DE)

Deutsche Forschungsgemeinschaft

Responsible consumption and production

Openalex Percentile: Top 7%

Biomedical Text Mining and Ontologies

3.27

DOI Open Access PDF OpenAlex

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HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools — Mario Sänger, Xing David Wang, et al. · Bioinformatics (2024) | TGRS Research Map | TGRS