Toward Gaussian Process Regression Modeling of a Urea Force Field

FFLUX is a next-generation, machine-learnt force field built on three cornerstones: quantum chemical topology, Gaussian process regression, and (high-rank) multipolar electrostatics. It is capable of performing molecular dynamics with near-quantum accuracy at a lower computational cost than standard <i>ab initio</i> molecular dynamics. Previous work with FFLUX was concerned with water and formamide. In this study, we go one step further and challenge FFLUX to model urea, a larger and more flexible system. In result, we have trained urea models at the B3LYP/aug-cc-pVTZ level of theory, with a mean absolute error of 0.4 kJ mol<sup>-1</sup> and a maximum prediction error below 7.0 kJ mol<sup>-1</sup>. To test their performance in molecular dynamics simulations, two sets of FFLUX geometry optimizations were carried out: 5 dimers corresponding to energy minima and 75 random dimers. The 5 dimers were recovered with a root-mean-square deviation below 0.1 Å with respect to their <i>ab initio</i> references. Out of the 75 random dimers, 68% converged to the qualitatively same dimer as those obtained at the <i>ab initio</i> level. Furthermore, we have ranked the 5 FFLUX-optimized dimers in the order of their relative FFLUX single-point energies and compared them with the <i>ab initio</i> method. The energy ranking fully agreed but for one crossover between two successive minima. Finally, we have demonstrated the importance of geometry-dependent (<i>i</i>.<i>e</i>., flexible) multipole moments, showing that the lack of multipole moment flexibility can lead to average errors in the total intermolecular electrostatic energy of more than 2 orders of magnitude.

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Journal
The Journal of Physical Chemistry A
Published
2024-09-20
DOI
https://doi.org/10.1021/acs.jpca.4c04117
Primary Topic
Gaussian Processes and Bayesian Inference
Type
article
Field-Weighted Citation Impact
0.00

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article

Toward Gaussian Process Regression Modeling of a Urea Force Field

Matthew L. Brown, Paul L. A. Popelier, Tomasz Bukowy
The Journal of Physical Chemistry A
Gaussian Processes and Bayesian Inference
article

Toward Gaussian Process Regression Modeling of a Urea Force Field

Matthew L. Brown, Paul L. A. Popelier, Tomasz Bukowy
article en

Abstract

FFLUX is a next-generation, machine-learnt force field built on three cornerstones: quantum chemical topology, Gaussian process regression, and (high-rank) multipolar electrostatics. It is capable of performing molecular dynamics with near-quantum accuracy at a lower computational cost than standard <i>ab initio</i> molecular dynamics. Previous work with FFLUX was concerned with water and formamide. In this study, we go one step further and challenge FFLUX to model urea, a larger and more flexible system. In result, we have trained urea models at the B3LYP/aug-cc-pVTZ level of theory, with a mean absolute error of 0.4 kJ mol<sup>-1</sup> and a maximum prediction error below 7.0 kJ mol<sup>-1</sup>. To test their performance in molecular dynamics simulations, two sets of FFLUX geometry optimizations were carried out: 5 dimers corresponding to energy minima and 75 random dimers. The 5 dimers were recovered with a root-mean-square deviation below 0.1 Å with respect to their <i>ab initio</i> references. Out of the 75 random dimers, 68% converged to the qualitatively same dimer as those obtained at the <i>ab initio</i> level. Furthermore, we have ranked the 5 FFLUX-optimized dimers in the order of their relative FFLUX single-point energies and compared them with the <i>ab initio</i> method. The energy ranking fully agreed but for one crossover between two successive minima. Finally, we have demonstrated the importance of geometry-dependent (<i>i</i>.<i>e</i>., flexible) multipole moments, showing that the lack of multipole moment flexibility can lead to average errors in the total intermolecular electrostatic energy of more than 2 orders of magnitude.

The Journal of Physical Chemistry AVol. 128(39)
University of Manchester (GB)
UK Research and Innovation, University of Manchester
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Openalex Percentile: Top 86%
Gaussian Processes and Bayesian Inference
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