POLYCORE: Polygon-based contour refinement for improved Intravascular Ultrasound Segmentation

Segmentation of the coronary vessel wall in intravascular ultrasound is a fundamental step in guiding coronary intervention. However, it is an challenging task, even for highly skilled cardiologists, due to image artefacts and shadowed regions caused by calcified plaque, guide wires and vessel side branches. Recently, dense-based neural networks have been applied to this task, however, they often fail to predict anatomically plausible contours in these low-signal areas. We propose a novel methodology called Polygon-based Contour Refiner (POLYCORE) that addresses topological error in dense-based segmentation networks using a relational inductive bias through higher-order connections between vertices to learn anatomically rational contours. Our approach remedies the over-smoothing phenomena common in polygon networks by introducing a new vector field refinement module which enables pixel-level detail to be added in an iterative process. POLYCORE is enhanced with augmented polygon aggregation which we show is more effective than typical dense-based test-time augmentation strategies. We achieve state-of-the-art results on two diverse datasets, observing particular improvements when segmenting the lumen structure and in topologically-challenging regions containing shadow artefacts. Our source code is available here: https://github.com/kitbransby/POLYCORE.

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Publication Details

Journal
Computers in Biology and Medicine
Published
2024-09-20
DOI
https://doi.org/10.1016/j.compbiomed.2024.109162
Citations
5
Primary Topic
Medical Image Segmentation Techniques
Type
article
Field-Weighted Citation Impact
1.25

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article

POLYCORE: Polygon-based contour refinement for improved Intravascular Ultrasound Segmentation

Anantharaman Ramasamy, Nathan Angelo Lecaros Yap, Greg Slabaugh, Christos V. Bourantas et al.
5 citations
Computers in Biology and Medicine
Medical Image Segmentation Techniques
1.25
article

POLYCORE: Polygon-based contour refinement for improved Intravascular Ultrasound Segmentation

Anantharaman Ramasamy, Nathan Angelo Lecaros Yap, Greg Slabaugh, Christos V. Bourantas, Qianni Zhang, Retesh Bajaj, Kit Mills Bransby, Murat Çap
article en
5 citations

Abstract

Segmentation of the coronary vessel wall in intravascular ultrasound is a fundamental step in guiding coronary intervention. However, it is an challenging task, even for highly skilled cardiologists, due to image artefacts and shadowed regions caused by calcified plaque, guide wires and vessel side branches. Recently, dense-based neural networks have been applied to this task, however, they often fail to predict anatomically plausible contours in these low-signal areas. We propose a novel methodology called Polygon-based Contour Refiner (POLYCORE) that addresses topological error in dense-based segmentation networks using a relational inductive bias through higher-order connections between vertices to learn anatomically rational contours. Our approach remedies the over-smoothing phenomena common in polygon networks by introducing a new vector field refinement module which enables pixel-level detail to be added in an iterative process. POLYCORE is enhanced with augmented polygon aggregation which we show is more effective than typical dense-based test-time augmentation strategies. We achieve state-of-the-art results on two diverse datasets, observing particular improvements when segmenting the lumen structure and in topologically-challenging regions containing shadow artefacts. Our source code is available here: https://github.com/kitbransby/POLYCORE.

Computers in Biology and MedicineVol. 182
Queen Mary University of London (GB), William Harvey Research Institute (GB)
British Heart Foundation, Rosetrees Trust, University College London Hospitals Biomedical Research Centre, NIHR Barts Biomedical Research Centre, Queen Mary University of London
Openalex Percentile: Top 19%
Medical Image Segmentation Techniques
1.25
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