Modular, inducible, and titratable expression systems for <i>Escherichia coli</i> and <i>Acinetobacter baumannii</i>

Gene expression systems that transcend species barriers are needed for cross-species analysis of gene function. In particular, expression systems that can be utilized in both model and pathogenic bacteria underpin comparative functional approaches that inform conserved and variable features of bacterial physiology. In this study, we develop replicative and integrative vectors alongside a novel, IPTG-inducible promoter that can be used in the model bacterium <i>Escherichia coli</i> K-12 as well as strains of the antibiotic-resistant pathogen, <i>Acinetobacter baumannii</i>. We generate modular vectors that transfer by conjugation at high efficiency and either replicate or integrate into the genome, depending on design. Embedded in these vectors, we also developed a synthetic, IPTG-inducible promoter, P<i><sub>abstBR</sub></i>, that induces to a high level but is less leaky than the commonly used <i>trc</i> promoter. We show that P<i><sub>abstBR</sub></i> is titratable at both the population and single-cell levels, regardless of species, highlighting the utility of our expression systems for cross-species functional studies. Finally, as a proof of principle, we use our integrating vector to develop a reporter for the <i>E. coli</i> envelope stress σ factor, RpoE, and deploy the reporter in <i>E. coli</i> and <i>A. baumannii</i>, finding that <i>A. baumannii</i> does not recognize RpoE-dependent promoters unless RpoE is heterologously expressed. We envision that these vector and promoter tools will be valuable for the community of researchers who study the fundamental biology of <i>E. coli</i> and <i>A. baumannii</i>.IMPORTANCE<i>Acinetobacter baumannii</i> is a multidrug-resistant, hospital-acquired pathogen with the ability to cause severe infections. Understanding the unique biology of this non-model bacterium may lead to the discovery of new weaknesses that can be targeted to treat antibiotic-resistant infections. In this study, we provide expression tools that can be used to study the gene function in <i>A. baumannii</i>, including in drug-resistant clinical isolates. These tools are also compatible with the model bacterium, <i>Escherichia coli</i>, enabling cross-species comparisons of gene function. We anticipate that the use of these tools by the scientific community will accelerate our understanding of <i>Acinetobacter</i> biology.

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Publication Details

Journal
Microbiology Spectrum
Published
2024-09-20
DOI
https://doi.org/10.1128/spectrum.01306-24
Citations
6
Primary Topic
Antibiotic Resistance in Bacteria
Type
article
Field-Weighted Citation Impact
1.02

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article

Modular, inducible, and titratable expression systems for Escherichia coli and Acinetobacter baumannii

Emily E. Bacon, Jennifer Tran, Jason M. Peters, Nischala Nadig
6 citations
Microbiology Spectrum
Antibiotic Resistance in Bacteria
1.02
article

Modular, inducible, and titratable expression systems for Escherichia coli and Acinetobacter baumannii

Emily E. Bacon, Jennifer Tran, Jason M. Peters, Nischala Nadig
article en
6 citations

Abstract

Gene expression systems that transcend species barriers are needed for cross-species analysis of gene function. In particular, expression systems that can be utilized in both model and pathogenic bacteria underpin comparative functional approaches that inform conserved and variable features of bacterial physiology. In this study, we develop replicative and integrative vectors alongside a novel, IPTG-inducible promoter that can be used in the model bacterium <i>Escherichia coli</i> K-12 as well as strains of the antibiotic-resistant pathogen, <i>Acinetobacter baumannii</i>. We generate modular vectors that transfer by conjugation at high efficiency and either replicate or integrate into the genome, depending on design. Embedded in these vectors, we also developed a synthetic, IPTG-inducible promoter, P<i><sub>abstBR</sub></i>, that induces to a high level but is less leaky than the commonly used <i>trc</i> promoter. We show that P<i><sub>abstBR</sub></i> is titratable at both the population and single-cell levels, regardless of species, highlighting the utility of our expression systems for cross-species functional studies. Finally, as a proof of principle, we use our integrating vector to develop a reporter for the <i>E. coli</i> envelope stress σ factor, RpoE, and deploy the reporter in <i>E. coli</i> and <i>A. baumannii</i>, finding that <i>A. baumannii</i> does not recognize RpoE-dependent promoters unless RpoE is heterologously expressed. We envision that these vector and promoter tools will be valuable for the community of researchers who study the fundamental biology of <i>E. coli</i> and <i>A. baumannii</i>.IMPORTANCE<i>Acinetobacter baumannii</i> is a multidrug-resistant, hospital-acquired pathogen with the ability to cause severe infections. Understanding the unique biology of this non-model bacterium may lead to the discovery of new weaknesses that can be targeted to treat antibiotic-resistant infections. In this study, we provide expression tools that can be used to study the gene function in <i>A. baumannii</i>, including in drug-resistant clinical isolates. These tools are also compatible with the model bacterium, <i>Escherichia coli</i>, enabling cross-species comparisons of gene function. We anticipate that the use of these tools by the scientific community will accelerate our understanding of <i>Acinetobacter</i> biology.

Microbiology SpectrumVol. 12(11)
University of Wisconsin–Madison (US), Great Lakes Bioenergy Research Center (US)
National Science Foundation, University of Wisconsin Carbone Cancer Center, National Institutes of Health, National Institute of Allergy and Infectious Diseases
Life in Land
Openalex Percentile: Top 26%
Antibiotic Resistance in Bacteria
1.02
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