A chromosome-level genome assembly of the legume pod borer, Maruca vitrata Fabricius (Lepidoptera: Crambidae)

Maruca vitrata, a significant pest of legumes, impacts food security in Asia and Africa. This study presents a high-quality genome assembly of M. vitrata, utilizing advanced sequencing technologies including Nanopore long-read, MGI short-read, and Hi-C. The genome, totaling 482.3 Mb with a contig N50 of 2.91 Mb, features 41.58% repetitive sequences and encompasses 13,320 protein-coding genes. We performed comparative genomic analyses to affirm the accuracy and completeness of the protein sequences assembled, ensuring the assembly's integrity. Additionally, the annotation of 83 Cytochrome P450 (CYP) genes further confirms the comprehensive nature of the genome assembly and its annotations. This genome assembly not only deepens our understanding of M. vitrata biology but also supports the development of sustainable pest management strategies. This research highlights the importance of genomics in advancing sustainable agricultural solutions through innovative pest management approaches.

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Publication Details

Journal
Scientific Data
Published
2024-09-18
DOI
https://doi.org/10.1038/s41597-024-03854-4
Citations
1
Primary Topic
Agricultural pest management studies
Type
article
Field-Weighted Citation Impact
0.60

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article

A chromosome-level genome assembly of the legume pod borer, Maruca vitrata Fabricius (Lepidoptera: Crambidae)

Congling Huang, Xuemei Tang, Shuai Liu, Kai Wan et al.
1 citations
Scientific Data
Agricultural pest management studies
0.60
article

A chromosome-level genome assembly of the legume pod borer, Maruca vitrata Fabricius (Lepidoptera: Crambidae)

Congling Huang, Xuemei Tang, Shuai Liu, Kai Wan, Jiale Wang
article en
1 citations

Abstract

Maruca vitrata, a significant pest of legumes, impacts food security in Asia and Africa. This study presents a high-quality genome assembly of M. vitrata, utilizing advanced sequencing technologies including Nanopore long-read, MGI short-read, and Hi-C. The genome, totaling 482.3 Mb with a contig N50 of 2.91 Mb, features 41.58% repetitive sequences and encompasses 13,320 protein-coding genes. We performed comparative genomic analyses to affirm the accuracy and completeness of the protein sequences assembled, ensuring the assembly's integrity. Additionally, the annotation of 83 Cytochrome P450 (CYP) genes further confirms the comprehensive nature of the genome assembly and its annotations. This genome assembly not only deepens our understanding of M. vitrata biology but also supports the development of sustainable pest management strategies. This research highlights the importance of genomics in advancing sustainable agricultural solutions through innovative pest management approaches.

Scientific DataVol. 11(1)
Key Laboratory of Guangdong Province (CN), Guangdong Academy of Agricultural Sciences (CN), Ministry of Agriculture (ID), Ministry of Agriculture and Rural Affairs (CN)
National Natural Science Foundation of China, Guangdong Academy of Agricultural Sciences, Basic and Applied Basic Research Foundation of Guangdong Province
Zero hunger
Openalex Percentile: Top 22%
Agricultural pest management studies
0.60
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A chromosome-level genome assembly of the legume pod borer, Maruca vitrata Fabricius (Lepidoptera: Crambidae) — Congling Huang, Xuemei Tang, et al. · Scientific Data (2024) | TGRS Research Map | TGRS