A Perspective on Neuroscience Data Standardization with Neurodata Without Borders

Neuroscience research has evolved to generate increasingly large and complex experimental data sets, and advanced data science tools are taking on central roles in neuroscience research. Neurodata Without Borders (NWB), a standard language for neurophysiology data, has recently emerged as a powerful solution for data management, analysis, and sharing. We here discuss our labs' efforts to implement NWB data science pipelines. We describe general principles and specific use cases that illustrate successes, challenges, and non-trivial decisions in software engineering. We hope that our experience can provide guidance for the neuroscience community and help bridge the gap between experimental neuroscience and data science. Key takeaways from this article are that (1) standardization with NWB requires non-trivial design choices; (2) the general practice of standardization in the lab promotes data awareness and literacy, and improves transparency, rigor, and reproducibility in our science; (3) we offer several feature suggestions to ease the extensibility, publishing/sharing, and usability for NWB standard and users of NWB data.

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Publication Details

Journal
Journal of Neuroscience
Published
2024-09-18
DOI
https://doi.org/10.1523/jneurosci.0381-24.2024
Citations
4
Primary Topic
Cell Image Analysis Techniques
Type
article
Field-Weighted Citation Impact
2.65

Funders

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A Perspective on Neuroscience Data Standardization with Neurodata Without Borders

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4 citations
Journal of Neuroscience
Cell Image Analysis Techniques
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article

A Perspective on Neuroscience Data Standardization with Neurodata Without Borders

Sandeep Robert Datta, Alexander Fleischmann, A.F. Pierre, Tuan D. Pham, Jonah E Pearl, Jason T. Ritt
article en
4 citations

Abstract

Neuroscience research has evolved to generate increasingly large and complex experimental data sets, and advanced data science tools are taking on central roles in neuroscience research. Neurodata Without Borders (NWB), a standard language for neurophysiology data, has recently emerged as a powerful solution for data management, analysis, and sharing. We here discuss our labs' efforts to implement NWB data science pipelines. We describe general principles and specific use cases that illustrate successes, challenges, and non-trivial decisions in software engineering. We hope that our experience can provide guidance for the neuroscience community and help bridge the gap between experimental neuroscience and data science. Key takeaways from this article are that (1) standardization with NWB requires non-trivial design choices; (2) the general practice of standardization in the lab promotes data awareness and literacy, and improves transparency, rigor, and reproducibility in our science; (3) we offer several feature suggestions to ease the extensibility, publishing/sharing, and usability for NWB standard and users of NWB data.

Journal of NeuroscienceVol. 44(38)
Allen Institute for Brain Science (US), Harvard University (US), Brown University (US)
National Institutes of Health, NIH Office of the Director, National Institute on Deafness and Other Communication Disorders, National Institute of Neurological Disorders and Stroke
Quality Education
Openalex Percentile: Top 10%
Cell Image Analysis Techniques
2.65
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