OUTPOST: A comprehensive analysis software for whole‐metagenome shotgun sequencing incorporating group stratification
The whole metagenOme shotgun seqUencing sTream Pipeline that is cOmprehensive and uSeful for mulTi groups experiments (OUTPOST) is a comprehensive analysis software for whole-metagenome shotgun sequencing incorporating group stratification, which encompasses 14 modules and boasts over 50 functions, distinguishing itself for its comprehensiveness when compared with 17 existing whole-metagenome shotgun sequencing (WMGS) tools. OUTPOST introduces innovative methods for multi-group experimental designs and meta-analysis-based biomarker identification.
Authors
- Zhaohui Ouyang
- Feng Tian (ORCID: https://orcid.org/0000-0001-7888-0587)
- Yihang Zhou (ORCID: https://orcid.org/0000-0002-3125-7672)
- Shikang Liang (ORCID: https://orcid.org/0000-0002-6930-7882)
- Honglei Tian (ORCID: https://orcid.org/0000-0001-6101-5466)
- Xiaozhu Wang (ORCID: https://orcid.org/0000-0002-3982-1186)
- Ke Wei (ORCID: https://orcid.org/0000-0001-8542-2146)
- Li Du (ORCID: https://orcid.org/0000-0002-3867-337X)
- Jason W.H. Wong (ORCID: https://orcid.org/0000-0003-2953-7728)
- Zhonglin Ma (ORCID: https://orcid.org/0009-0004-4716-1909)
- Yanbin Fu (ORCID: https://orcid.org/0000-0002-3424-4420)
- Jiangtao Li (ORCID: https://orcid.org/0000-0001-9225-6748)
- Xinyi Yan (ORCID: https://orcid.org/0009-0002-7282-5274)
- Wenqi Song (ORCID: https://orcid.org/0000-0003-3751-9538)
- Chao Zhang (ORCID: https://orcid.org/0000-0003-3867-6455)
- Jihong Zheng (ORCID: https://orcid.org/0000-0002-1247-6087)
- Zhuoqun Liu (ORCID: https://orcid.org/0000-0001-7576-3537)
- Liu Liu
- Jen Hao David Shih
- Yuchen Xiao (ORCID: https://orcid.org/0000-0002-9610-9240)
Institutions
- Hebei University of Engineering (CN)
- Tongji University (CN)
- Shanghai Jiao Tong University (CN)
- Hong Kong University of Science and Technology (HK)
- Renji Hospital (CN)
- Shanghai Ninth People's Hospital (CN)
- Shanghai Cancer Institute (CN)
- Shanghai East Hospital (CN)
- Shanghai Sunshine Rehabilitation Center (CN)
- State Key Laboratory of Marine Geology
- University of Hong Kong (HK)
Publication Details
- Journal
- iMetaOmics.
- Published
- 2024-09-18
- DOI
- https://doi.org/10.1002/imo2.29
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Natural Science Foundation of China
- Tongji University
- National Key Research and Development Program of China