Text-guided small molecule generation via diffusion model

The <i>de novo</i> generation of molecules with targeted properties is crucial in biology, chemistry, and drug discovery. Current generative models are limited to using single property values as conditions, struggling with complex customizations described in detailed human language. To address this, we propose the text guidance instead, and introduce TextSMOG, a new <i>text-guided small molecule generation approach</i> via <i>diffusion model</i>, which integrates language and diffusion models for text-guided small molecule generation. This method uses textual conditions to guide molecule generation, enhancing both stability and diversity. Experimental results show TextSMOG's proficiency in capturing and utilizing information from textual descriptions, making it a powerful tool for generating 3D molecular structures in response to complex textual customizations.

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Publication Details

Journal
iScience
Published
2024-09-19
DOI
https://doi.org/10.1016/j.isci.2024.110992
Citations
5
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
1.81

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article

Text-guided small molecule generation via diffusion model

Junfeng Fang, Sihang Li, Zhiyuan Liu, Xiang Wang et al.
5 citations
iScience
Computational Drug Discovery Methods
1.81
article

Text-guided small molecule generation via diffusion model

Junfeng Fang, Sihang Li, Zhiyuan Liu, Xiang Wang, An Zhang, Jiancan Wu, Yanchen Luo, Wenjie Du
article en
5 citations

Abstract

The <i>de novo</i> generation of molecules with targeted properties is crucial in biology, chemistry, and drug discovery. Current generative models are limited to using single property values as conditions, struggling with complex customizations described in detailed human language. To address this, we propose the text guidance instead, and introduce TextSMOG, a new <i>text-guided small molecule generation approach</i> via <i>diffusion model</i>, which integrates language and diffusion models for text-guided small molecule generation. This method uses textual conditions to guide molecule generation, enhancing both stability and diversity. Experimental results show TextSMOG's proficiency in capturing and utilizing information from textual descriptions, making it a powerful tool for generating 3D molecular structures in response to complex textual customizations.

iScienceVol. 27(11)
University of Science and Technology of China (CN), National University of Singapore (SG)
National Natural Science Foundation of China, University of Science and Technology of China
Openalex Percentile: Top 13%
Computational Drug Discovery Methods
1.81
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