Chromosome-level genome assembly of the planthopper Nilaparvata muiri

The Nilaparvata muiri (Hemiptera: Delphacidae) is a sibling species of a destructive rice insect pest, the brown planthopper (BPH), Nilaparvata lugens. Here, we generated a high-quality chromosome-level genome assembly of N. muiri using a combination of the PacBio HiFi sequencing, Illumina short-read sequencing and Hi-C scaffolding technologies. The genome assembly (524.9 Mb) is anchored to 15 pseudochromosomes, with a scaffold N50 of 43.3 Mb and 99.1% BUSCO completeness. It contains 188.1 Mb repeat sequences and 13204 protein-coding genes. As a closely related species within the same genus as the significant pest, N. lugens, the chromosome-level genome assembly of N. muiri will provide important support for the better analysis of pathogenicity mechanisms of N. lugens based on comparative genomics.

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Publication Details

Journal
Scientific Data
Published
2024-09-19
DOI
https://doi.org/10.1038/s41597-024-03870-4
Citations
2
Primary Topic
Plant Virus Research Studies
Type
article
Field-Weighted Citation Impact
1.20

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article

Chromosome-level genome assembly of the planthopper Nilaparvata muiri

C.Y. Wang, Shuhua Liu, Jian Tang, Ju Luo et al.
2 citations
Scientific Data
Plant Virus Research Studies
1.20
article

Chromosome-level genome assembly of the planthopper Nilaparvata muiri

C.Y. Wang, Shuhua Liu, Jian Tang, Ju Luo, Guiying Yang, Aiying Wang
article en
2 citations

Abstract

The Nilaparvata muiri (Hemiptera: Delphacidae) is a sibling species of a destructive rice insect pest, the brown planthopper (BPH), Nilaparvata lugens. Here, we generated a high-quality chromosome-level genome assembly of N. muiri using a combination of the PacBio HiFi sequencing, Illumina short-read sequencing and Hi-C scaffolding technologies. The genome assembly (524.9 Mb) is anchored to 15 pseudochromosomes, with a scaffold N50 of 43.3 Mb and 99.1% BUSCO completeness. It contains 188.1 Mb repeat sequences and 13204 protein-coding genes. As a closely related species within the same genus as the significant pest, N. lugens, the chromosome-level genome assembly of N. muiri will provide important support for the better analysis of pathogenicity mechanisms of N. lugens based on comparative genomics.

Scientific DataVol. 11(1)
China National Rice Research Institute (CN)
Natural Science Foundation of Zhejiang Province
Zero hunger
Openalex Percentile: Top 16%
Plant Virus Research Studies
1.20
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Chromosome-level genome assembly of the planthopper Nilaparvata muiri — C.Y. Wang, Shuhua Liu, et al. · Scientific Data (2024) | TGRS Research Map | TGRS