The complete mitochondrial genome and phylogenetic analysis of <i>Rattus tanezumi</i> (Niethammer, 1975), captured from North China

<i>Rattus tanezumi</i> (Niethammer, 1975) is one of the commensal rodent species in South China. With the development of transportation and climate change, <i>R. tanezumi</i> has gradually migrated north and become the dominant rat species for the past few years. In this study, we assembled a complete mitochondrial genome of <i>R. tanezumi</i>, captured from North China. The mitogenome contains 16,307 nucleotide pairs, including 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes, as well as one non-coding control region. Based on whole mitogenome phylogenetical analysis showed that <i>R. tanezumi</i> captured from North China had a close phylogenetic relationship with that from Japan and South Korea. These findings are valuable for further studies on the evolution, genetic diversity, and taxonomy of Asian commensal rodent.

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Journal
Mitochondrial DNA Part B
Published
2024-09-01
DOI
https://doi.org/10.1080/23802359.2024.2404211
Primary Topic
Genetic diversity and population structure
Type
article
Field-Weighted Citation Impact
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article

The complete mitochondrial genome and phylogenetic analysis of Rattus tanezumi (Niethammer, 1975), captured from North China

Xiaodong Shi, Zhanying Han, Yamei Wei, Luling Li et al.
Mitochondrial DNA Part B
Genetic diversity and population structure
article

The complete mitochondrial genome and phylogenetic analysis of Rattus tanezumi (Niethammer, 1975), captured from North China

Xiaodong Shi, Zhanying Han, Yamei Wei, Luling Li, Shiyou Liu, Qi Li, Hong Tian, Yanbo Zhang, Xu Han, XU Yong-gang, Yanan Cai, Weimin Han
article en

Abstract

<i>Rattus tanezumi</i> (Niethammer, 1975) is one of the commensal rodent species in South China. With the development of transportation and climate change, <i>R. tanezumi</i> has gradually migrated north and become the dominant rat species for the past few years. In this study, we assembled a complete mitochondrial genome of <i>R. tanezumi</i>, captured from North China. The mitogenome contains 16,307 nucleotide pairs, including 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes, as well as one non-coding control region. Based on whole mitogenome phylogenetical analysis showed that <i>R. tanezumi</i> captured from North China had a close phylogenetic relationship with that from Japan and South Korea. These findings are valuable for further studies on the evolution, genetic diversity, and taxonomy of Asian commensal rodent.

Mitochondrial DNA Part BVol. 9(9)
Hebei Medical University (CN), Hebei Provincial Center for Disease Control and Prevention (CN)
Hebei Provincial Key Research Projects
Climate action
Openalex Percentile: Top 83%
Genetic diversity and population structure
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The complete mitochondrial genome and phylogenetic analysis of <i>Rattus tanezumi</i> (Niethammer, 1975), captured from North China — Xiaodong Shi, Zhanying Han, et al. · Mitochondrial DNA Part B (2024) | TGRS Research Map | TGRS