Using grass inflorescence as source material for biomonitoring through environmental DNA metabarcoding

The observed biases could be explained by the accidental inclusion of invertebrate specimens during sample collection and DNA extraction. Primer biases towards the amplified taxa could be another reason for the observed RRA results. This study provided insight into the invertebrate community associated with the four sampled grass species. It should be noted that with the lack of negative field controls, it is impossible to rule out the influence of airborne eDNA on the observed diversity associated with each grass species. The lack of the inclusion of PCR and extraction blanks in the sequencing step, as well as the inclusion of negative field controls, including other areas for refinement were highlighted, and suggestions were provided to improve the outcomes of future studies.

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Publication Details

Journal
Molecular Biology Reports
Published
2024-09-16
DOI
https://doi.org/10.1007/s11033-024-09885-9
Citations
1
Primary Topic
Environmental DNA in Biodiversity Studies
Type
article
Field-Weighted Citation Impact
0.46

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article

Using grass inflorescence as source material for biomonitoring through environmental DNA metabarcoding

Willem G. Coetzer
1 citations
Molecular Biology Reports
Environmental DNA in Biodiversity Studies
0.46
article

Using grass inflorescence as source material for biomonitoring through environmental DNA metabarcoding

Willem G. Coetzer
article en
1 citations

Abstract

The observed biases could be explained by the accidental inclusion of invertebrate specimens during sample collection and DNA extraction. Primer biases towards the amplified taxa could be another reason for the observed RRA results. This study provided insight into the invertebrate community associated with the four sampled grass species. It should be noted that with the lack of negative field controls, it is impossible to rule out the influence of airborne eDNA on the observed diversity associated with each grass species. The lack of the inclusion of PCR and extraction blanks in the sequencing step, as well as the inclusion of negative field controls, including other areas for refinement were highlighted, and suggestions were provided to improve the outcomes of future studies.

Molecular Biology ReportsVol. 51(1)
University of Fort Hare (ZA), University of the Free State (ZA)
National Research Foundation, Universiteit van die Vrystaat, University of Fort Hare
Life in Land
Openalex Percentile: Top 30%
Environmental DNA in Biodiversity Studies
0.46
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Using grass inflorescence as source material for biomonitoring through environmental DNA metabarcoding — Willem G. Coetzer · Molecular Biology Reports (2024) | TGRS Research Map | TGRS