TAG‐SPARK: Empowering High‐Speed Volumetric Imaging With Deep Learning and Spatial Redundancy

Two-photon high-speed fluorescence calcium imaging stands as a mainstream technique in neuroscience for capturing neural activities with high spatiotemporal resolution. However, challenges arise from the inherent tradeoff between acquisition speed and image quality, grappling with a low signal-to-noise ratio (SNR) due to limited signal photon flux. Here, a contrast-enhanced video-rate volumetric system, integrating a tunable acoustic gradient (TAG) lens-based high-speed microscopy with a TAG-SPARK denoising algorithm is demonstrated. The former facilitates high-speed dense z-sampling at sub-micrometer-scale intervals, allowing the latter to exploit the spatial redundancy of z-slices for self-supervised model training. This spatial redundancy-based approach, tailored for 4D (xyzt) dataset, not only achieves >700% SNR enhancement but also retains fast-spiking functional profiles of neuronal activities. High-speed plus high-quality images are exemplified by in vivo Purkinje cells calcium observation, revealing intriguing dendritic-to-somatic signal convolution, i.e., similar dendritic signals lead to reverse somatic responses. This tailored technique allows for capturing neuronal activities with high SNR, thus advancing the fundamental comprehension of neuronal transduction pathways within 3D neuronal architecture.

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Publication Details

Journal
Advanced Science
Published
2024-09-16
DOI
https://doi.org/10.1002/advs.202405293
Citations
3
Primary Topic
Advanced Fluorescence Microscopy Techniques
Type
article
Field-Weighted Citation Impact
1.99

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article

TAG‐SPARK: Empowering High‐Speed Volumetric Imaging With Deep Learning and Spatial Redundancy

Bi‐Chang Chen, Ming‐Kai Pan, Chang-Ling Chung, Jye‐Chang Lee et al.
3 citations
Advanced Science
Advanced Fluorescence Microscopy Techniques
1.99
article

TAG‐SPARK: Empowering High‐Speed Volumetric Imaging With Deep Learning and Spatial Redundancy

Bi‐Chang Chen, Ming‐Kai Pan, Chang-Ling Chung, Jye‐Chang Lee, Kai-Chun Jhan, Shi‐Wei Chu, Guanjie Huang, Yin-Tzu Hsieh, Shun‐Chi Wu, Wun-Ci Chen, Ting-Chen Chang
article en
3 citations

Abstract

Two-photon high-speed fluorescence calcium imaging stands as a mainstream technique in neuroscience for capturing neural activities with high spatiotemporal resolution. However, challenges arise from the inherent tradeoff between acquisition speed and image quality, grappling with a low signal-to-noise ratio (SNR) due to limited signal photon flux. Here, a contrast-enhanced video-rate volumetric system, integrating a tunable acoustic gradient (TAG) lens-based high-speed microscopy with a TAG-SPARK denoising algorithm is demonstrated. The former facilitates high-speed dense z-sampling at sub-micrometer-scale intervals, allowing the latter to exploit the spatial redundancy of z-slices for self-supervised model training. This spatial redundancy-based approach, tailored for 4D (xyzt) dataset, not only achieves >700% SNR enhancement but also retains fast-spiking functional profiles of neuronal activities. High-speed plus high-quality images are exemplified by in vivo Purkinje cells calcium observation, revealing intriguing dendritic-to-somatic signal convolution, i.e., similar dendritic signals lead to reverse somatic responses. This tailored technique allows for capturing neuronal activities with high SNR, thus advancing the fundamental comprehension of neuronal transduction pathways within 3D neuronal architecture.

Advanced ScienceVol. 11(41)
National Taiwan University (TW), National Tsing Hua University (TW), Institute of Biomedical Sciences, Academia Sinica (TW), Research Center for Applied Science, Academia Sinica (TW), National Taiwan University Hospital (TW)
Ministry of Education, India, National Tsing Hua University, National Taiwan University Hospital, National Taiwan University, National Science and Technology Council
Openalex Percentile: Top 12%
Advanced Fluorescence Microscopy Techniques
1.99
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