The Genome-Wide Identification of the Dihydroflavonol 4-Reductase (DFR) Gene Family and Its Expression Analysis in Different Fruit Coloring Stages of Strawberry

Dihydroflavonol 4-reductase (DFR) significantly influences the modification of flower color. To explore the role of <i>DFR</i> in the synthesis of strawberry anthocyanins, in this study, we downloaded the CDS sequences of the <i>DFR</i> gene family from the <i>Arabidopsis</i> genome database TAIR; the DFR family of forest strawberry was compared; then, a functional domain screen was performed using NCBI; the selected strawberry DFR genes were analyzed; and the expression characteristics of the family members were studied by qRT-PCR. The results showed that there are 57 members of the DFR gene family in strawberry, which are mainly expressed in the cytoplasm and chloroplast; most of them are hydrophilic proteins; and the secondary structure of the protein is mainly composed of α-helices and random coils. The analysis revealed that <i>FvDFR</i> genes mostly contain light, hormone, abiotic stress, and meristem response elements. From the results of the qRT-PCR analysis, the relative expression of each member of the <i>FvDFR</i> gene was significantly different, which was expressed throughout the process of fruit coloring. Most genes had the highest expression levels in the full coloring stage (S4). The expression of <i>FvDFR30</i>, <i>FvDFR54</i>, and <i>FvDFR56</i> during the S4 period was 8, 2.4, and 2.4 times higher than during the S1 period, indicating that the <i>DFR</i> gene plays a key role in regulating the fruit coloration of strawberry. In the strawberry genome, 57 members of the strawberry <i>DFR</i> gene family were identified. The higher the <i>DFR</i> gene expression, the higher the anthocyanin content, and the <i>DFR</i> gene may be the key gene in anthocyanin synthesis. Collectively, the <i>DFR</i> gene is closely related to fruit coloring, which lays a foundation for further exploring the function of the <i>DFR</i> gene family.

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Publication Details

Journal
International Journal of Molecular Sciences
Published
2024-09-13
DOI
https://doi.org/10.3390/ijms25189911
Citations
7
Primary Topic
Plant Gene Expression Analysis
Type
article
Field-Weighted Citation Impact
1.64

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article

The Genome-Wide Identification of the Dihydroflavonol 4-Reductase (DFR) Gene Family and Its Expression Analysis in Different Fruit Coloring Stages of Strawberry

Xin Li, Lizhen Chen, Yongqing Feng, Hui-Lan Qiao et al.
7 citations
International Journal of Molecular Sciences
Plant Gene Expression Analysis
1.64
article

The Genome-Wide Identification of the Dihydroflavonol 4-Reductase (DFR) Gene Family and Its Expression Analysis in Different Fruit Coloring Stages of Strawberry

Xin Li, Lizhen Chen, Yongqing Feng, Hui-Lan Qiao, Xuechun Tian, Aiyuan Wu, Zonghuan Ma, Ying-Jun Hou
article en
7 citations

Abstract

Dihydroflavonol 4-reductase (DFR) significantly influences the modification of flower color. To explore the role of <i>DFR</i> in the synthesis of strawberry anthocyanins, in this study, we downloaded the CDS sequences of the <i>DFR</i> gene family from the <i>Arabidopsis</i> genome database TAIR; the DFR family of forest strawberry was compared; then, a functional domain screen was performed using NCBI; the selected strawberry DFR genes were analyzed; and the expression characteristics of the family members were studied by qRT-PCR. The results showed that there are 57 members of the DFR gene family in strawberry, which are mainly expressed in the cytoplasm and chloroplast; most of them are hydrophilic proteins; and the secondary structure of the protein is mainly composed of α-helices and random coils. The analysis revealed that <i>FvDFR</i> genes mostly contain light, hormone, abiotic stress, and meristem response elements. From the results of the qRT-PCR analysis, the relative expression of each member of the <i>FvDFR</i> gene was significantly different, which was expressed throughout the process of fruit coloring. Most genes had the highest expression levels in the full coloring stage (S4). The expression of <i>FvDFR30</i>, <i>FvDFR54</i>, and <i>FvDFR56</i> during the S4 period was 8, 2.4, and 2.4 times higher than during the S1 period, indicating that the <i>DFR</i> gene plays a key role in regulating the fruit coloration of strawberry. In the strawberry genome, 57 members of the strawberry <i>DFR</i> gene family were identified. The higher the <i>DFR</i> gene expression, the higher the anthocyanin content, and the <i>DFR</i> gene may be the key gene in anthocyanin synthesis. Collectively, the <i>DFR</i> gene is closely related to fruit coloring, which lays a foundation for further exploring the function of the <i>DFR</i> gene family.

International Journal of Molecular SciencesVol. 25(18)
Gansu Agricultural University (CN)
National Natural Science Foundation of China
Life in Land
Openalex Percentile: Top 16%
Plant Gene Expression Analysis
1.64
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