Easy analysis of bacterial whole-genome sequencing data for clinical microbiologists using open-source Galaxy platform: Characterization of ESBL-producing Enterobacterales from bloodstream infections
The open-access Galaxy platform provides a graphical interface and easy-to-use tools suitable for routine use in clinical microbiology laboratories without bioinformatics specialists. We believe that this platform will facilitate fast and low-cost analysis of bacterial WGS data, especially in resource-limited settings.
Authors
- Yvan Caspar (ORCID: https://orcid.org/0000-0002-8332-9383)
- Aimé Berwa
Institutions
- Centre National de la Recherche Scientifique (FR)
- Commissariat à l'Énergie Atomique et aux Énergies Alternatives (FR)
- Centre Hospitalier Universitaire de Grenoble (FR)
- CEA Grenoble (FR)
- Institut de Biologie Structurale (FR)
- Pathogénèse Bactérienne et Réponses Cellulaires
- Université Grenoble Alpes (FR)
Publication Details
- Journal
- Journal of Global Antimicrobial Resistance
- Published
- 2024-09-13
- DOI
- https://doi.org/10.1016/j.jgar.2024.08.012
- Citations
- 1
- Primary Topic
- Bacterial Identification and Susceptibility Testing
- Type
- article
- Field-Weighted Citation Impact
- 0.38