RealMedQA: A pilot biomedical question answering dataset containing realistic clinical questions

Clinical question answering systems have the potential to provide clinicians with relevant and timely answers to their questions. Nonetheless, despite the advances that have been made, adoption of these systems in clinical settings has been slow. One issue is a lack of question-answering datasets which reflect the real-world needs of health professionals. In this work, we present RealMedQA, a dataset of realistic clinical questions generated by humans and an LLM. We describe the process for generating and verifying the QA pairs and assess several QA models on BioASQ and RealMedQA to assess the relative difficulty of matching answers to questions. We show that the LLM is more cost-efficient for generating "ideal" QA pairs. Additionally, we achieve a lower lexical similarity between questions and answers than BioASQ which provides an additional challenge to the top two QA models, as per the results. We release our code and our dataset publicly to encourage further research.

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Publication Details

Journal
PubMed
Published
2024-08-16
DOI
https://doi.org/10.48550/arxiv.2408.08624
Primary Topic
Topic Modeling
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article
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RealMedQA: A pilot biomedical question answering dataset containing realistic clinical questions

Gregory Kell, Iain James Marshall, J Coumbe, Angus Roberts et al.
PubMed
Topic Modeling
article

RealMedQA: A pilot biomedical question answering dataset containing realistic clinical questions

Gregory Kell, Iain James Marshall, J Coumbe, Angus Roberts, Ryan‐Rhys Griffiths, Chloe Simela, Serge Umansky, Nikhil Patel, Najma Ahmed, Yuti Khare, Julian Rozario
article en

Abstract

Clinical question answering systems have the potential to provide clinicians with relevant and timely answers to their questions. Nonetheless, despite the advances that have been made, adoption of these systems in clinical settings has been slow. One issue is a lack of question-answering datasets which reflect the real-world needs of health professionals. In this work, we present RealMedQA, a dataset of realistic clinical questions generated by humans and an LLM. We describe the process for generating and verifying the QA pairs and assess several QA models on BioASQ and RealMedQA to assess the relative difficulty of matching answers to questions. We show that the LLM is more cost-efficient for generating "ideal" QA pairs. Additionally, we achieve a lower lexical similarity between questions and answers than BioASQ which provides an additional challenge to the top two QA models, as per the results. We release our code and our dataset publicly to encourage further research.

PubMedVol. 2024
Maidstone and Tunbridge Wells NHS Trust (GB), King's College London (GB), University of Cambridge (GB)
Topic Modeling
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