Identification of VvAGL Genes Reveals Their Network’s Involvement in the Modulation of Seed Abortion via Responding Multi-Hormone Signals in Grapevines

The formation of seedless traits is regulated by multiple factors. AGLs, which belong to the MADS-box family, were reported to be important regulators in this process; however, the underlying mechanism remains elusive. Here, we identified the VvAGL sub-family genes during the seed abortion process in seedless grapevine cv. 'JingkeJing' and found 40 differentially expressed VvAGL members and 1069 interacting proteins in this process. Interestingly, almost all members and their interacting proteins involved in the tryptophan metabolic pathway (K14486) and participated in the phytohormone signalling (KO04075) pathway, including the growth hormone (IAA), salicylic acid (SA), abscisic acid (ABA), cytokinin (CTK), and ethylene signalling pathways. The promoters of AGL sub-family genes contain cis-elements in response to hormones such as IAA, ABA, CTK, SA, and ETH, implying that they might respond to multi-hormone signals and involve in hormone signal transductions. Further expression analysis revealed <i>VvAGL6-2</i>, <i>VvAGL11, VvAGL62-11</i>, and <i>VvAGL15</i> had the highest expression at the critical period of seed abortion, and there were positive correlations between ETH-<i>VvAGL15</i>-<i>VvAGL6-2</i>, ABA-<i>VvAGL80</i>, and SA-<i>VvAGL62</i> in promoting seed abortion but negative feedback between IAA-<i>VvAGL15</i>-<i>VvAGL6-2</i> and CTK-<i>VvAGL11</i>. Furthermore, many genes in the IAA, ABA, SA, CTK, and ETH pathways had a special expressional pattern in the seed, whereby we developed a regulatory network mediated by VvAGLs by responding to multihormonal crosstalk during grape seed abortion. Our findings provide new insights into the regulatory network of VvAGLs in multi-hormone signalling to regulate grape seed abortion, which could be helpful in the molecular breeding of high-quality seedless grapes.