Whole genome sequence data of a lignocellulose-degrading bacterium, Arthrobacter koreensis BSB isolated from the soils of Santiniketan, India

A draft genome sequence of an isolate of <i>Arthrobacter koreensis</i> BSB from Santiniketan soil is being published. A. koreensis BSB produces lignocellulases, which are crucial in plant biomass degradation. It is a potential source of enzymes of digestive importance, especially lignocellulases. Genomic DNA was isolated from a single bacterial colony using a QIAgen Blood and Tissue kit (QIAgen Inc., Canada). Illumina HiSeq X performed the DNA sequence, employing 2 × 150 paired-end chemistry, and 8,725,587 reads were obtained, corresponding to a sequence coverage of 755X. The draft genome assembly formed 15 contigs > 200 base pairs in length (N50 value= 446, 958 and L50= 3). The genome size is 3,466,004 base pairs with an average GC percentage of 65.94 %. Annotation and prediction of genes were carried out with Prokka v.1.14.6, and 3,172 CDS, 3236 genes, 58 tRNA genes, 4 rRNA genes, and 2 tmRNA genes were identified.

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Journal
Data in Brief
Published
2024-09-12
DOI
https://doi.org/10.1016/j.dib.2024.110915
Primary Topic
Genomics and Phylogenetic Studies
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article
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article

Whole genome sequence data of a lignocellulose-degrading bacterium, Arthrobacter koreensis BSB isolated from the soils of Santiniketan, India

Shibani Chaudhury, Binoy Kumar Show, Srinivasan Balachandran, Raju Biswas et al.
Data in Brief
Genomics and Phylogenetic Studies
article

Whole genome sequence data of a lignocellulose-degrading bacterium, Arthrobacter koreensis BSB isolated from the soils of Santiniketan, India

Shibani Chaudhury, Binoy Kumar Show, Srinivasan Balachandran, Raju Biswas, Andrew B. Ross
article en

Abstract

A draft genome sequence of an isolate of <i>Arthrobacter koreensis</i> BSB from Santiniketan soil is being published. A. koreensis BSB produces lignocellulases, which are crucial in plant biomass degradation. It is a potential source of enzymes of digestive importance, especially lignocellulases. Genomic DNA was isolated from a single bacterial colony using a QIAgen Blood and Tissue kit (QIAgen Inc., Canada). Illumina HiSeq X performed the DNA sequence, employing 2 × 150 paired-end chemistry, and 8,725,587 reads were obtained, corresponding to a sequence coverage of 755X. The draft genome assembly formed 15 contigs > 200 base pairs in length (N50 value= 446, 958 and L50= 3). The genome size is 3,466,004 base pairs with an average GC percentage of 65.94 %. Annotation and prediction of genes were carried out with Prokka v.1.14.6, and 3,172 CDS, 3236 genes, 58 tRNA genes, 4 rRNA genes, and 2 tmRNA genes were identified.

Data in BriefVol. 57
Visva-Bharati University (IN), University of Leeds (GB)
Biotechnology and Biological Sciences Research Council
Life in Land
Openalex Percentile: Top 86%
Genomics and Phylogenetic Studies
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Whole genome sequence data of a lignocellulose-degrading bacterium, Arthrobacter koreensis BSB isolated from the soils of Santiniketan, India — Shibani Chaudhury, Binoy Kumar Show, et al. · Data in Brief (2024) | TGRS Research Map | TGRS