Scywalker: scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing
Scywalker is available on github.com/derijkp/scywalker under the GNU General Public License (GPL) and at https://zenodo.org/records/13359438/files/scywalker-0.108.0-Linux-x86_64.tar.gz.
Authors
- Lena Duchateau (ORCID: https://orcid.org/0000-0002-1689-7014)
- Bert De Rybel (ORCID: https://orcid.org/0000-0002-9551-042X)
- Kristel Sleegers (ORCID: https://orcid.org/0000-0002-0283-2332)
- Frank Van Breusegem (ORCID: https://orcid.org/0000-0002-3147-0860)
- Thomas Eekhout (ORCID: https://orcid.org/0000-0002-2878-1553)
- Mojca Stražišar (ORCID: https://orcid.org/0000-0001-8046-3408)
- Patrick J. Willems (ORCID: https://orcid.org/0000-0003-4667-2294)
- Lara De Deyn (ORCID: https://orcid.org/0000-0002-0438-7308)
- Peter De Rijk (ORCID: https://orcid.org/0000-0001-8558-9288)
- Tim De Pooter (ORCID: https://orcid.org/0000-0002-1097-5464)
- Geert Joris (ORCID: https://orcid.org/0009-0008-9744-2468)
- Rosa Rademakers (ORCID: https://orcid.org/0000-0002-4049-0863)
- Fahri Küçükali (ORCID: https://orcid.org/0000-0002-3835-9639)
- Júlia Faura (ORCID: https://orcid.org/0000-0002-8436-1377)
- Wouter De Coster (ORCID: https://orcid.org/0000-0002-5248-8197)
- Jasper Van Dongen (ORCID: https://orcid.org/0000-0001-5599-0046)
- Tijs Watzeels (ORCID: https://orcid.org/0000-0002-0232-5269)
- Carolin Grones
- Stéphane Rombauts (ORCID: https://orcid.org/0000-0002-3985-4981)
Institutions
- University of Antwerp (BE)
- Ghent University Hospital (BE)
- Ghent University (BE)
- VIB-UGent Center for Plant Systems Biology (BE)
- VIB-UAntwerp Center for Molecular Neurology (BE)
- VIB-UGent Center for Medical Biotechnology (BE)
- VIB Single Cell Core
Publication Details
- Journal
- Bioinformatics
- Published
- 2024-09-01
- DOI
- https://doi.org/10.1093/bioinformatics/btae549
- Citations
- 5
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 1.17
Funders
- Alzheimer's Association
- Fonds Wetenschappelijk Onderzoek
- Vlaams Instituut voor Biotechnologie
- Universiteit Antwerpen
- Vlaamse regering
- Fondation pour la Recherche sur Alzheimer