Scywalker: scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Scywalker is available on github.com/derijkp/scywalker under the GNU General Public License (GPL) and at https://zenodo.org/records/13359438/files/scywalker-0.108.0-Linux-x86_64.tar.gz.

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Publication Details

Journal
Bioinformatics
Published
2024-09-01
DOI
https://doi.org/10.1093/bioinformatics/btae549
Citations
5
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
1.17

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Scywalker: scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Lena Duchateau, Bert De Rybel, Kristel Sleegers, Frank Van Breusegem et al.
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Scywalker: scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Lena Duchateau, Bert De Rybel, Kristel Sleegers, Frank Van Breusegem, Thomas Eekhout, Mojca Stražišar, Patrick J. Willems, Lara De Deyn, Peter De Rijk, Tim De Pooter, Geert Joris, Rosa Rademakers, Fahri Küçükali, Júlia Faura, Wouter De Coster, Jasper Van Dongen, Tijs Watzeels, Carolin Grones, Stéphane Rombauts
article en
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Abstract

Scywalker is available on github.com/derijkp/scywalker under the GNU General Public License (GPL) and at https://zenodo.org/records/13359438/files/scywalker-0.108.0-Linux-x86_64.tar.gz.

BioinformaticsVol. 40(9)
University of Antwerp (BE), Ghent University Hospital (BE), Ghent University (BE), VIB-UGent Center for Plant Systems Biology (BE), VIB-UAntwerp Center for Molecular Neurology (BE), VIB-UGent Center for Medical Biotechnology (BE), VIB Single Cell Core
Alzheimer's Association, Fonds Wetenschappelijk Onderzoek, Vlaams Instituut voor Biotechnologie, Universiteit Antwerpen, Vlaamse regering, Fondation pour la Recherche sur Alzheimer
Openalex Percentile: Top 22%
Single-cell and spatial transcriptomics
1.17
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