Draft genome sequence data of Pythium cedri Chen 4, the causal pathogen of deodar cedar root rot

<i>Pythium</i> species are distributed globally, with certain members playing significant roles as plant and animal pathogens. <i>Pythium cedri</i> Chen 4 has been identified as a pathogenic isolate responsible for causing root rot on <i>Cedrus deodara</i>. Here, a comprehensive genome-wide sequence of <i>P. cedri</i> strain Chen 4 utilizing the Illumina NovaSeq sequencing platform and a Pacific Biosciences Sequel sequencing platform is presented. The genome of <i>P. cedri</i> strain Chen 4 was assembled into 150 contigs containing a combined size of 41.25 Mb, N50 value of 1,717,859 bp and N90 value of 431,829 bp. Genome annotation revealed 14,077 protein-encoding genes and 364 of the 1016 predicted proteins were putative effectors. The present work enriches the genetic resources of <i>P. cedri</i> for studying its evolution and can contribute to a better understanding of <i>P. cedri</i>-host interaction.

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Journal
Data in Brief
Published
2024-09-10
DOI
https://doi.org/10.1016/j.dib.2024.110930
Primary Topic
Plant Pathogens and Resistance
Type
article
Field-Weighted Citation Impact
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article

Draft genome sequence data of Pythium cedri Chen 4, the causal pathogen of deodar cedar root rot

Yusufjon Gafforov, Yuanyuan Chen, Jiajia Chen, Hongjun Yang et al.
Data in Brief
Plant Pathogens and Resistance
article

Draft genome sequence data of Pythium cedri Chen 4, the causal pathogen of deodar cedar root rot

Yusufjon Gafforov, Yuanyuan Chen, Jiajia Chen, Hongjun Yang, Yifan Xing, Jin-Feng Peng, Jian Yu
article en

Abstract

<i>Pythium</i> species are distributed globally, with certain members playing significant roles as plant and animal pathogens. <i>Pythium cedri</i> Chen 4 has been identified as a pathogenic isolate responsible for causing root rot on <i>Cedrus deodara</i>. Here, a comprehensive genome-wide sequence of <i>P. cedri</i> strain Chen 4 utilizing the Illumina NovaSeq sequencing platform and a Pacific Biosciences Sequel sequencing platform is presented. The genome of <i>P. cedri</i> strain Chen 4 was assembled into 150 contigs containing a combined size of 41.25 Mb, N50 value of 1,717,859 bp and N90 value of 431,829 bp. Genome annotation revealed 14,077 protein-encoding genes and 364 of the 1016 predicted proteins were putative effectors. The present work enriches the genetic resources of <i>P. cedri</i> for studying its evolution and can contribute to a better understanding of <i>P. cedri</i>-host interaction.

Data in BriefVol. 57
Academy of Sciences Republic of Uzbekistan (UZ), New Uzbekistan University (UZ), National University of Uzbekistan (UZ), Henan Agricultural University (CN)
National Natural Science Foundation of China
Zero hunger
Openalex Percentile: Top 92%
Plant Pathogens and Resistance
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Draft genome sequence data of Pythium cedri Chen 4, the causal pathogen of deodar cedar root rot — Yusufjon Gafforov, Yuanyuan Chen, et al. · Data in Brief (2024) | TGRS Research Map | TGRS