Deep learning for symmetry classification using sparse 3D electron density data for inorganic compounds

We report a novel deep learning (DL) method for classifying inorganic compounds using 3D electron density data. We transform Density Functional Theory (DFT)-derived CHGCAR files from the Materials Project (MP) and experimental data from the Inorganic Crystal Structure Database (ICSD) into point clouds and sparse tensors, optimized for use in DL models such as PointNet and Sparse 3D CNN. This approach effectively overcomes the limitations of handling the dense 3D data, a common challenge in DL. Contrasting with traditional 1D or 2D X-ray diffraction (XRD) patterns that necessitate complex reciprocal space analysis, our method utilizes 3D density data for direct interpretation in real lattice space. This shift significantly enhances classification accuracy, outperforming traditional XRD-driven DL methods. We achieve accuracies of 97.28%, 90.77%, and 90.10% for crystal system, extinction group, and space group classifications, respectively. Our 3D electron density-based DL approach not only showcases improved accuracy but also contributes a more intuitive and effective framework for materials discovery.

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Publication Details

Journal
npj Computational Materials
Published
2024-09-09
DOI
https://doi.org/10.1038/s41524-024-01402-7
Citations
4
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.47

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article

Deep learning for symmetry classification using sparse 3D electron density data for inorganic compounds

Myoungho Pyo, Byung Do Lee, Kee‐Sun Sohn, Woon Bae Park et al.
4 citations
npj Computational Materials
Machine Learning in Materials Science
0.47
article

Deep learning for symmetry classification using sparse 3D electron density data for inorganic compounds

Myoungho Pyo, Byung Do Lee, Kee‐Sun Sohn, Woon Bae Park, Young‐Kook Lee, Seonghwan Kim, Min Young Cho
article en
4 citations

Abstract

We report a novel deep learning (DL) method for classifying inorganic compounds using 3D electron density data. We transform Density Functional Theory (DFT)-derived CHGCAR files from the Materials Project (MP) and experimental data from the Inorganic Crystal Structure Database (ICSD) into point clouds and sparse tensors, optimized for use in DL models such as PointNet and Sparse 3D CNN. This approach effectively overcomes the limitations of handling the dense 3D data, a common challenge in DL. Contrasting with traditional 1D or 2D X-ray diffraction (XRD) patterns that necessitate complex reciprocal space analysis, our method utilizes 3D density data for direct interpretation in real lattice space. This shift significantly enhances classification accuracy, outperforming traditional XRD-driven DL methods. We achieve accuracies of 97.28%, 90.77%, and 90.10% for crystal system, extinction group, and space group classifications, respectively. Our 3D electron density-based DL approach not only showcases improved accuracy but also contributes a more intuitive and effective framework for materials discovery.

npj Computational MaterialsVol. 10(1)
Yonsei University (KR), Sunchon National University (KR), Sejong University (KR)
National Research Foundation, Ministry of Trade, Industry and Energy, National Research Foundation of Korea
Openalex Percentile: Top 39%
Machine Learning in Materials Science
0.47
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Deep learning for symmetry classification using sparse 3D electron density data for inorganic compounds — Myoungho Pyo, Byung Do Lee, et al. · npj Computational Materials (2024) | TGRS Research Map | TGRS