TolRad, a model for predicting radiation tolerance using Pfam annotations, identifies novel radiosensitive bacterial species from reference genomes and MAGs

Bacterial species have vast genetic diversity, allowing for life in extreme environments and the conduction of complex chemistry. The ability to harness the full potential of bacterial diversity is hampered by the lack of high-throughput experimental or bioinformatic methods for characterizing bacterial traits. Here, we present a computational model that uses <i>de novo</i>-generated genome annotations to classify a bacterium as tolerant of ionizing radiation (IR) or as radiosensitive. This model allows for rapid screening of bacterial communities for low-tolerance species that are of interest for both mechanistic studies into bacterial sensitivity to IR and biomarkers of IR exposure.

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Publication Details

Journal
Microbiology Spectrum
Published
2024-09-05
DOI
https://doi.org/10.1128/spectrum.03838-23
Primary Topic
Microbial Community Ecology and Physiology
Type
article
Field-Weighted Citation Impact
0.00

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article

TolRad, a model for predicting radiation tolerance using Pfam annotations, identifies novel radiosensitive bacterial species from reference genomes and MAGs

Matthew Burroughs, Philip Sweet, Sungyeon Jang, Lydia M. Contreras
Microbiology Spectrum
Microbial Community Ecology and Physiology
article

TolRad, a model for predicting radiation tolerance using Pfam annotations, identifies novel radiosensitive bacterial species from reference genomes and MAGs

Matthew Burroughs, Philip Sweet, Sungyeon Jang, Lydia M. Contreras
article en

Abstract

Bacterial species have vast genetic diversity, allowing for life in extreme environments and the conduction of complex chemistry. The ability to harness the full potential of bacterial diversity is hampered by the lack of high-throughput experimental or bioinformatic methods for characterizing bacterial traits. Here, we present a computational model that uses <i>de novo</i>-generated genome annotations to classify a bacterium as tolerant of ionizing radiation (IR) or as radiosensitive. This model allows for rapid screening of bacterial communities for low-tolerance species that are of interest for both mechanistic studies into bacterial sensitivity to IR and biomarkers of IR exposure.

Microbiology SpectrumVol. 12(10)
The University of Texas at Austin (US)
U.S. Department of Defense, Defense Threat Reduction Agency, U.S. Air Force, Intelligence Advanced Research Projects Activity, Air Force Office of Scientific Research
Life in Land
Openalex Percentile: Top 85%
Microbial Community Ecology and Physiology
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TolRad, a model for predicting radiation tolerance using Pfam annotations, identifies novel radiosensitive bacterial species from reference genomes and MAGs — Matthew Burroughs, Philip Sweet, et al. · Microbiology Spectrum (2024) | TGRS Research Map | TGRS