TolRad, a model for predicting radiation tolerance using Pfam annotations, identifies novel radiosensitive bacterial species from reference genomes and MAGs
Bacterial species have vast genetic diversity, allowing for life in extreme environments and the conduction of complex chemistry. The ability to harness the full potential of bacterial diversity is hampered by the lack of high-throughput experimental or bioinformatic methods for characterizing bacterial traits. Here, we present a computational model that uses <i>de novo</i>-generated genome annotations to classify a bacterium as tolerant of ionizing radiation (IR) or as radiosensitive. This model allows for rapid screening of bacterial communities for low-tolerance species that are of interest for both mechanistic studies into bacterial sensitivity to IR and biomarkers of IR exposure.
Authors
- Matthew Burroughs
- Philip Sweet (ORCID: https://orcid.org/0000-0002-0802-693X)
- Sungyeon Jang
- Lydia M. Contreras (ORCID: https://orcid.org/0000-0001-5010-5511)
Institutions
- The University of Texas at Austin (US)
Publication Details
- Journal
- Microbiology Spectrum
- Published
- 2024-09-05
- DOI
- https://doi.org/10.1128/spectrum.03838-23
- Primary Topic
- Microbial Community Ecology and Physiology
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- U.S. Department of Defense
- Defense Threat Reduction Agency
- U.S. Air Force
- Intelligence Advanced Research Projects Activity
- Air Force Office of Scientific Research