Sangerbox 2: Enhanced functionalities and update for a comprehensive clinical bioinformatics data analysis platform

In recent years, development in high-throughput sequencing technologies has experienced an increasing application of statistics, pattern recognition, and machine learning in bioinformatics analyses. SangeBox platform to meet different scientific demands. The new version of Sangs is a widely used tool among many researchers, which encourages us to continuously improve the plerBox 2 (http://vip.sangerbox.com) and extends and optimizes the functions of interactive graphics and analysis of clinical bioinformatics data. We introduced novel analytical tools such as random forests and support vector machines, as well as corresponding plotting functions. At the same time, we also optimized the performance of the platform and fixed known problems to allow users to perform data analyses more quickly and efficiently. SangerBox 2 improved the speed of analysis, reduced resource required for computer performance, and provided more analysis methods, greatly promoting the research efficiency.

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Publication Details

Journal
iMeta
Published
2024-09-02
DOI
https://doi.org/10.1002/imt2.238
Citations
88
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
92.48

Funders

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article

Sangerbox 2: Enhanced functionalities and update for a comprehensive clinical bioinformatics data analysis platform

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88 citations
iMeta
Scientific Computing and Data Management
92.48
article

Sangerbox 2: Enhanced functionalities and update for a comprehensive clinical bioinformatics data analysis platform

Shuang Li, Dongming Yan, Huiwu Xing, Henan Jiao, Lixia Xu, Di Chen, Yuting He, Xueyuan Li, Hongjiang Li, Ziguang Song, Weitao Shen, Lixin Wu, Xuqiang Zhu, Jing Yan
article en
88 citations

Abstract

In recent years, development in high-throughput sequencing technologies has experienced an increasing application of statistics, pattern recognition, and machine learning in bioinformatics analyses. SangeBox platform to meet different scientific demands. The new version of Sangs is a widely used tool among many researchers, which encourages us to continuously improve the plerBox 2 (http://vip.sangerbox.com) and extends and optimizes the functions of interactive graphics and analysis of clinical bioinformatics data. We introduced novel analytical tools such as random forests and support vector machines, as well as corresponding plotting functions. At the same time, we also optimized the performance of the platform and fixed known problems to allow users to perform data analyses more quickly and efficiently. SangerBox 2 improved the speed of analysis, reduced resource required for computer performance, and provided more analysis methods, greatly promoting the research efficiency.

iMetaVol. 3(5)
Harbin Medical University (CN), First Affiliated Hospital of Harbin Medical University (CN), First Affiliated Hospital of Zhengzhou University (CN)
National Natural Science Foundation of China, China Postdoctoral Science Foundation
Openalex Percentile: Top 0%
Scientific Computing and Data Management
92.48
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