Structural Optimization and Structure–Activity Relationship of 1<i>H</i>-Pyrazole-4-carboxylic Acid Derivatives as DNA 6mA Demethylase ALKBH1 Inhibitors and Their Antigastric Cancer Activity
DNA <i>N</i><sup>6</sup>-methyladenine (6mA) demethylase ALKBH1 plays an important role in various cellular processes. Dysregulation of ALKBH1 is associated with the development of some cancer types, including gastric cancer, implicating a potential therapeutic target. However, there is still a lack of potent ALKBH1 inhibitors. Herein, we report the discovery of a highly potent ALKBH1 inhibitor, 1<i>H</i>-pyrazole-4-carboxylic acid derivative <b>29</b>. The structure-activity relationship of this series of compounds was also discussed. Because of the poor cell membrane permeability of <b>29</b>, we prepared a prodrug of <b>29</b> (<b>29E</b>), which showed excellent cellular activities. In gastric cancer cell lines HGC27 and AGS, <b>29E</b> treatment significantly increased the abundance of 6mA, inhibited cell viability, and upregulated the AMP-activated protein kinase (AMPK) signaling pathway. In addition, the hydrolysis product <b>29</b> showed high exposure in mice after administration of <b>29E</b>. Collectively, this research provides a new potent ALKBH1 inhibitor, which could serve as a lead compound for subsequent drug development.
Authors
- Ke Xu (ORCID: https://orcid.org/0000-0002-8130-1109)
- Yinping Guo (ORCID: https://orcid.org/0000-0003-1796-6584)
- Shengyong Yang (ORCID: https://orcid.org/0000-0001-5147-3746)
- Liang Xiong (ORCID: https://orcid.org/0000-0003-1174-5609)
- Aiping Tong (ORCID: https://orcid.org/0000-0002-3392-5443)
- Zijie Xiong
- Yuyang Wang (ORCID: https://orcid.org/0000-0003-4109-5379)
- Jian Zhang (ORCID: https://orcid.org/0000-0001-9877-1601)
- Feng Li (ORCID: https://orcid.org/0000-0002-2616-5343)
- Linli Li (ORCID: https://orcid.org/0000-0001-7743-434X)
- Shanmian Ji
Institutions
- Sichuan University (CN)
- State Key Laboratory of Biotherapy
Publication Details
- Journal
- Journal of Medicinal Chemistry
- Published
- 2024-09-03
- DOI
- https://doi.org/10.1021/acs.jmedchem.4c01072
- Citations
- 6
- Primary Topic
- Epigenetics and DNA Methylation
- Type
- article
- Field-Weighted Citation Impact
- 1.40
Funders
- National Natural Science Foundation of China
- China Postdoctoral Science Foundation
- Sichuan University
- Sichuan Province Science and Technology Support Program
- National Key Research and Development Program of China
- Fundamental Research Funds for the Central Universities
- West China Hospital, Sichuan University