The draft genomes of Crassostrea gasar and Crassostrea rhizophorae: key resources for leveraging oyster cultivation in the Southwest Atlantic
The draft assembly size of Crassostrea gasar is 506 Mbp, and of Crassostrea rhizophorae is 584 Mbp with scaffolds N50 of 11,3 Mbp and 4,9 Mbp, respectively. The general masked bases by RepeatMasker in both genomes were highly similar using different datasets. The masked bases varied from 9.41% in C. gasar to 10.05% in C. rhizophorae and 42.85% in C. gasar to 44.44% in C. rhizophorae using Dfam and RepeatModeler datasets, respectively. Functional annotation with eggNog resulted in 34,693 annotated proteins in C. rhizophorae and 26,328 in C. gasar. BUSCO analysis shows that almost 99% of genes (5,295) are complete in relation to the mollusk orthologous genes dataset (mollusca_odb10).
Authors
- Ana Tereza Ribeiro de Vasconcelos (ORCID: https://orcid.org/0000-0002-4632-2086)
- Flávia Lucena Zacchi (ORCID: https://orcid.org/0000-0003-1808-1390)
- Afonso Celso Dias Bainy (ORCID: https://orcid.org/0000-0002-3885-7718)
- Luiz Gonzaga Paula de Almeida (ORCID: https://orcid.org/0000-0002-7124-2715)
- Lorena Rodrigues Naves Martins Soares (ORCID: https://orcid.org/0000-0001-9654-1829)
- Nicholas Costa Barroso Lima (ORCID: https://orcid.org/0000-0002-3011-010X)
- Cristiano Lazoski (ORCID: https://orcid.org/0000-0002-6322-4672)
- Alexandra Lehmkuhl Gerber (ORCID: https://orcid.org/0000-0001-5724-6106)
- Cláudio Melo (ORCID: https://orcid.org/0000-0002-0969-7022)
- Ana Paula de Campos Guimarães (ORCID: https://orcid.org/0000-0001-9519-0545)
- Frederico Henning (ORCID: https://orcid.org/0000-0002-5359-504X)
- Antônio M. Solé‐Cava (ORCID: https://orcid.org/0000-0003-0363-5821)
- Rafaela Guilherme Soares
Institutions
- Universidade Federal do Rio de Janeiro (BR)
- Universidade Federal do Ceará (BR)
- Universidade Federal de Santa Catarina (BR)
- Laboratório Nacional de Computação Científica (BR)
Publication Details
- Journal
- BMC Genomic Data
- Published
- 2024-09-03
- DOI
- https://doi.org/10.1186/s12863-024-01262-6
- Citations
- 1
- Primary Topic
- Marine Bivalve and Aquaculture Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.28
Funders
- Conselho Nacional de Desenvolvimento Científico e Tecnológico
- Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro