Electron Attachment to the Nucleobase Uracil in Diethylene Glycol: The Signature of a Doorway

The cellular environment plays a significant role in low energy electron-mediated radiation damage to genetic materials. In this study, we have modeled the effect of the bulk medium on electron attachment to nucleobases in diethylene glycol (DEG) using uracil as a test case, in accordance with recent experimental work on the observation of dissociative quasi-free electron attachment to nucleoside via excited anion radical in solution (in DEG). Our EOM-CCSD-based quantum mechanical/molecular mechanical (QM/MM) simulations indicate that the electron scavenging by uracil in DEG is much slower than that observed in the aqueous medium due to its viscosity. This work also establishes that a doorway mechanism exists in uracil microsolvated and bulk solvated with DEG, with the dipole-bound state and solvent-bound state acting as doorway states, respectively.

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Publication Details

Journal
ChemPhysChem
Published
2024-09-02
DOI
https://doi.org/10.1002/cphc.202400581
Citations
1
Primary Topic
DNA and Nucleic Acid Chemistry
Type
article
Field-Weighted Citation Impact
0.23

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article

Electron Attachment to the Nucleobase Uracil in Diethylene Glycol: The Signature of a Doorway

Amitava Adhikary, Achintya Kumar Dutta, Jishnu Narayanan S J, Pooja Verma
1 citations
ChemPhysChem
DNA and Nucleic Acid Chemistry
0.23
article

Electron Attachment to the Nucleobase Uracil in Diethylene Glycol: The Signature of a Doorway

Amitava Adhikary, Achintya Kumar Dutta, Jishnu Narayanan S J, Pooja Verma
article en
1 citations

Abstract

The cellular environment plays a significant role in low energy electron-mediated radiation damage to genetic materials. In this study, we have modeled the effect of the bulk medium on electron attachment to nucleobases in diethylene glycol (DEG) using uracil as a test case, in accordance with recent experimental work on the observation of dissociative quasi-free electron attachment to nucleoside via excited anion radical in solution (in DEG). Our EOM-CCSD-based quantum mechanical/molecular mechanical (QM/MM) simulations indicate that the electron scavenging by uracil in DEG is much slower than that observed in the aqueous medium due to its viscosity. This work also establishes that a doorway mechanism exists in uracil microsolvated and bulk solvated with DEG, with the dipole-bound state and solvent-bound state acting as doorway states, respectively.

ChemPhysChemVol. 25(24)
Indian Institute of Technology Bombay (IN), Oakland University (US)
National Science Foundation, Department of Science and Technology, Ministry of Science and Technology, India, Indian Space Research Organisation, Indian Institute of Technology Bombay, Université Paris-Saclay, Science and Engineering Research Board, Division of Chemistry
Affordable and clean energy
Openalex Percentile: Top 43%
DNA and Nucleic Acid Chemistry
0.23
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