Murine Retina Outer Plexiform Layer Development and Transcriptome Analysis of Pre-Synapses in Photoreceptors

Photoreceptors in the mammalian retina convert light signals into electrical and molecular signals through phototransduction and transfer the visual inputs to second-order neurons via specialized ribbon synapses. Two kinds of photoreceptors, rods and cones, possess distinct morphology and function. Currently, we have limited knowledge about rod versus (vs.) cone synapse development and the associated genes. The transcription factor neural retina leucine zipper (NRL) determines the rod vs. cone photoreceptor cell fate and is critical for rod differentiation. <i>Nrl</i> knockout mice fail to form rods, generating all cone or S-cone-like (SCL) photoreceptors in the retina, whereas ectopic expression of <i>Nrl</i> using a cone-rod homeobox (<i>Crx</i>) promoter (<i>Crx</i>p<i>Nrl</i>) forms all rods. Here, we examined rod and cone pre-synapse development, including axonal elongation, terminal shaping, and synaptic lamination in the outer plexiform layer (OPL) in the presence or absence of <i>Nrl</i>. We show that NRL loss and knockdown result in delayed OPL maturation and plasticity with aberrant dendrites of bipolar neurons. The integrated analyses of the transcriptome in developing rods and SCLs with NRL CUT&RUN and synaptic gene ontology analyses identified G protein subunit beta (<i>Gnb</i>) 1 and p21 (RAC1) activated kinase 5 (<i>Pak5 or Pak7</i>) transcripts were upregulated in developing rods and down-regulated in developing SCLs. Notably, <i>Gnb1</i> and <i>Gnb5</i> are rod dominant, and <i>Gnb3</i> is enriched in cones. NRL binds to the genes of <i>Gnb1</i>, <i>Gnb3</i>, and <i>Gnb5</i>. NRL also regulates pre-synapse ribbon genes, and their expression is altered in rods and SCLs. Our study of histological and gene analyses provides new insights into the morphogenesis of photoreceptor pre-synapse development and regulation of associated genes in the developing retina.