A Medical Decision Support Platform for Identifying Thrombospondin 1 in Non-alcoholic Fatty Liver Disease <em>via</em> Immuno-Infiltration Analysis
Non-alcoholic fatty liver disease (NAFLD) and myocardial infarction (MI) are two major health burdens with significant prevalence and mortality. This study aimed to explore the co-expressed genes to understand the relationship between NAFLD and MI and identify potential crucial biomarkers of NAFLD-related MI using bioinformatics and machine learning. Functional enrichment analysis was conducted, a co-protein-protein interaction (PPI) network diagram was constructed, and support vector machine-recursive feature elimination (SVM-RFE) and least absolute shrinkage and selection operator (LASSO) techniques were employed to identify one differentially expressed gene (DEG), Thrombospondin 1 (THBS1). THBS1 demonstrated strong performance in distinguishing NAFLD patients (AUC = 0.981) and MI patients (AUC = 0.900). Immuno-infiltration analysis revealed significantly lower CD8+ T cells and higher neutrophil levels in patients with NAFLD and MI. CD8+ T cells and neutrophils were effective in distinguishing NAFLD/MI from healthy controls. Correlation analysis showed that THBS1 was positively correlated with CCR (chemokine receptor), MHC class (major histocompatibility complex class), neutrophils, parainflammation, and Tfh (follicular helper T cells), and negatively correlated with CD8+ T cells, cytolytic activity, and TIL (tumor-infiltrating lymphocytes) in NAFLD and MI patients. THBS1 emerged as a novel biomarker for diagnosing NAFLD/MI in comparison to healthy controls. The results indicate that CD8+ T cells and neutrophils could serve as inflammatory immune features for differentiating patients with NAFLD/MI from healthy individuals.
Authors
- Ningxia Wu
- Jiaman Hu (ORCID: https://orcid.org/0009-0009-8727-906X)
- Victor Hugo C. de Albuquerque (ORCID: https://orcid.org/0000-0003-3886-4309)
- Jiajia Xu (ORCID: https://orcid.org/0000-0002-7345-8122)
- Jianing Chi (ORCID: https://orcid.org/0000-0001-9242-6225)
- Lin Xu (ORCID: https://orcid.org/0000-0002-0537-922X)
- Pengfei Li (ORCID: https://orcid.org/0000-0001-6436-4573)
- Hua Cai (ORCID: https://orcid.org/0009-0005-6904-820X)
- Min Li (ORCID: https://orcid.org/0000-0002-7113-2700)
- Jianyu Huang (ORCID: https://orcid.org/0000-0001-5588-995X)
- Yutong Ji
- Senthil Kumar Jagatheesaperumal (ORCID: https://orcid.org/0000-0002-9516-0327)
- Zhongqiu Lin
- Peng Liu (ORCID: https://orcid.org/0000-0002-0792-0657)
Institutions
- Universidade Federal do Ceará (BR)
- Southern Command Hospital (IN)
Publication Details
- Journal
- Journal of Visualized Experiments
- Published
- 2024-08-30
- DOI
- https://doi.org/10.3791/67328
- Citations
- 1
- Primary Topic
- Liver Disease Diagnosis and Treatment
- Type
- article
- Field-Weighted Citation Impact
- 0.39