Actinomycetospora aeridis sp. nov., Actinomycetospora flava sp. nov. and Actinomycetospora aurantiaca sp. nov., endophytic actinobacteria isolated from wild orchid (Aerides multiflora Roxb)

Three novel mycelium-forming actinobacteria, designated OC33-EN06<sup>T</sup>, OC33-EN07<sup>T</sup>, and OC33-EN08<sup>T</sup>, were isolated from wild orchid (<i>Aerides multiflora</i> Roxb), collected from a hill evergreen forest in Northern Thailand. Strains OC33-EN06<sup>T</sup> and OC33-EN07<sup>T</sup> showed the highest 16S rRNA gene similarity with <i>Actinomycetospora lutea</i> TT00-04<sup>T</sup>, 99.17 and 99.45%, respectively. Strain OC33-EN08<sup>T</sup> showed high similarity with four species, namely '<i>Actinomycetospora termitidis</i> Odt1-22<sup>T</sup>' (99.37%), <i>Actinomycetospora chiangmaiensis</i> DSM 45062<sup>T</sup> (99.02%), <i>Actinomycetospora corticicola</i> 014-5<sup>T</sup> (99.02%), and <i>Actinomycetospora soli</i> SF1<sup>T</sup> (98.81%). Comparative genome analysis of OC33-EN06<sup>T</sup>, OC33-EN07<sup>T</sup>, and OC33-EN08<sup>T</sup> with the closely related type strains showed that average nucleotide identity (ANI) based on blast, ANI based on MUMmer, and average amino acid identity values were less than 95% and the digital DNA-DNA hybridization values were less than 70%, all below the thresholds for species demarcation. The digital G+C content of OC33-EN06<sup>T</sup>, OC33-EN07<sup>T</sup>, and OC33-EN08<sup>T</sup> were 74.5, 74, and 74 mol%, respectively. These three strains developed bud-like chains of non-motile cylindrical spores with a smooth surface. The cell-wall peptidoglycan contained <i>meso</i>-diaminopimelic acid. The whole-cell sugars contained ribose, arabinose, and galactose. The predominant menaquinone was MK-8(H<sub>4</sub>). The phospholipid profile included phosphatidylcholine, phosphatidylethanolamine, phosphatidylmethylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylinositol. Based on comparative analysis of genotypic, phenotypic and chemotaxonomic data, strains OC33-EN06<sup>T</sup> (=TBRC 18349<sup>T</sup>=NBRC 116543<sup>T</sup>), OC33-EN07<sup>T</sup> (=TBRC 18350<sup>T</sup>=NBRC 116544<sup>T</sup>), and OC33-EN08<sup>T</sup> (=TBRC 18318<sup>T</sup>=NBRC 116542<sup>T</sup>) represent the type strains of three novel species of the genus <i>Actinomycetospora</i> for which the names <i>Actinomycetospora aeridis</i> sp. nov., <i>Actinomycetospora flava</i> sp. nov., and <i>Actinomycetospora aurantiaca</i> sp. nov., are proposed.

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2024-08-30
DOI
https://doi.org/10.1099/ijsem.0.006505
Primary Topic
Genomics and Phylogenetic Studies
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article
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article

Actinomycetospora aeridis sp. nov., Actinomycetospora flava sp. nov. and Actinomycetospora aurantiaca sp. nov., endophytic actinobacteria isolated from wild orchid (Aerides multiflora Roxb)

Chatsuda Sakdapetsiri, Tawanmol Pujchakarn, Chanwit Suriyachadkun, Chanjira Ayawong et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
article

Actinomycetospora aeridis sp. nov., Actinomycetospora flava sp. nov. and Actinomycetospora aurantiaca sp. nov., endophytic actinobacteria isolated from wild orchid (Aerides multiflora Roxb)

Chatsuda Sakdapetsiri, Tawanmol Pujchakarn, Chanwit Suriyachadkun, Chanjira Ayawong, Wipaporn Ngaemthao, Suwanee Chunhametha, Kamonchai Chairote
article en

Abstract

Three novel mycelium-forming actinobacteria, designated OC33-EN06<sup>T</sup>, OC33-EN07<sup>T</sup>, and OC33-EN08<sup>T</sup>, were isolated from wild orchid (<i>Aerides multiflora</i> Roxb), collected from a hill evergreen forest in Northern Thailand. Strains OC33-EN06<sup>T</sup> and OC33-EN07<sup>T</sup> showed the highest 16S rRNA gene similarity with <i>Actinomycetospora lutea</i> TT00-04<sup>T</sup>, 99.17 and 99.45%, respectively. Strain OC33-EN08<sup>T</sup> showed high similarity with four species, namely '<i>Actinomycetospora termitidis</i> Odt1-22<sup>T</sup>' (99.37%), <i>Actinomycetospora chiangmaiensis</i> DSM 45062<sup>T</sup> (99.02%), <i>Actinomycetospora corticicola</i> 014-5<sup>T</sup> (99.02%), and <i>Actinomycetospora soli</i> SF1<sup>T</sup> (98.81%). Comparative genome analysis of OC33-EN06<sup>T</sup>, OC33-EN07<sup>T</sup>, and OC33-EN08<sup>T</sup> with the closely related type strains showed that average nucleotide identity (ANI) based on blast, ANI based on MUMmer, and average amino acid identity values were less than 95% and the digital DNA-DNA hybridization values were less than 70%, all below the thresholds for species demarcation. The digital G+C content of OC33-EN06<sup>T</sup>, OC33-EN07<sup>T</sup>, and OC33-EN08<sup>T</sup> were 74.5, 74, and 74 mol%, respectively. These three strains developed bud-like chains of non-motile cylindrical spores with a smooth surface. The cell-wall peptidoglycan contained <i>meso</i>-diaminopimelic acid. The whole-cell sugars contained ribose, arabinose, and galactose. The predominant menaquinone was MK-8(H<sub>4</sub>). The phospholipid profile included phosphatidylcholine, phosphatidylethanolamine, phosphatidylmethylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylinositol. Based on comparative analysis of genotypic, phenotypic and chemotaxonomic data, strains OC33-EN06<sup>T</sup> (=TBRC 18349<sup>T</sup>=NBRC 116543<sup>T</sup>), OC33-EN07<sup>T</sup> (=TBRC 18350<sup>T</sup>=NBRC 116544<sup>T</sup>), and OC33-EN08<sup>T</sup> (=TBRC 18318<sup>T</sup>=NBRC 116542<sup>T</sup>) represent the type strains of three novel species of the genus <i>Actinomycetospora</i> for which the names <i>Actinomycetospora aeridis</i> sp. nov., <i>Actinomycetospora flava</i> sp. nov., and <i>Actinomycetospora aurantiaca</i> sp. nov., are proposed.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 74(8)
National Science and Technology Development Agency (TH), Kasetsart University (TH), National Center for Genetic Engineering and Biotechnology (TH)
National Science and Technology Development Agency, National Research Council of Thailand, National Center for Genetic Engineering and Biotechnology
Life in Land
Openalex Percentile: Top 87%
Genomics and Phylogenetic Studies
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