RiboSnake – a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis
RiboSnake is a new alternative for researchers employing <i>16S rRNA</i> gene amplicon sequencing and looking for a customizable and user-friendly pipeline for microbiome analyses with <i>in vitro</i> validated settings. By automating the analysis with validated parameters for diverse sample types, RiboSnake enhances existing methods significantly. The workflow repository can be found on GitHub (https://github.com/IKIM-Essen/RiboSnake).
Authors
- Josefa Welling
- Jan Kehrmann (ORCID: https://orcid.org/0000-0002-1494-9191)
- Jule Gosch (ORCID: https://orcid.org/0009-0006-7513-6975)
- Ricarda Maria Schmithausen (ORCID: https://orcid.org/0000-0002-3736-8672)
- Folker Meyer (ORCID: https://orcid.org/0000-0003-1112-2284)
- Ivana Kraiselburd (ORCID: https://orcid.org/0000-0002-9677-6094)
- Hannah Möhlen
- Ann-Kathrin Dörr
- Adrian Dörr (ORCID: https://orcid.org/0009-0000-2526-0384)
Institutions
- University Hospital Bonn (DE)
- Essen University Hospital (DE)
- University of Duisburg-Essen (DE)
Publication Details
- Journal
- Gigabyte
- Published
- 2024-08-31
- DOI
- https://doi.org/10.46471/gigabyte.132
- Citations
- 1
- Primary Topic
- Microbial Community Ecology and Physiology
- Type
- article
- Field-Weighted Citation Impact
- 0.46