A high-quality genome assembly of the shrubby cinquefoil (Dasiphora fruticosa)

Dasiphora fruticosa (Rosaceae), commonly known as shrubby cinquefoil, is a flowering shrub of high ornamental value yet underutilized in East Asian landscapes. Given its broad elevational distribution range, D. fruticosa serves as an ideal model for studying genetic adaptations and speciation along elevation gradients. Here, we present a high-quality chromosome-scale assembly of D. fruticosa with a genome size of 249.23 Mb and a contig N50 length of 14.01 Mb. The genome sequence contains 32,613 protein-coding genes, of which 30,643 (93.96%) were functionally annotated. Compared to the published D. fruticosa genome sequence, our assembly demonstrates higher completeness and continuity. Furthermore, comparative genomic analyses provide insights into the phylogenetic relationship and high-altitude adaptation of D. fruticosa. Overall, our study offers a valuable genetic resource for both molecular and evolutionary research on shrubby cinquefoil.

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Publication Details

Journal
Scientific Data
Published
2024-08-30
DOI
https://doi.org/10.1038/s41597-024-03781-4
Citations
2
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.47
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article

A high-quality genome assembly of the shrubby cinquefoil (Dasiphora fruticosa)

Yanxia Sun, Tao Deng, Baoqing Ren, Jun‐Tong Chen et al.
2 citations
Scientific Data
Genomics and Phylogenetic Studies
0.47
article

A high-quality genome assembly of the shrubby cinquefoil (Dasiphora fruticosa)

Yanxia Sun, Tao Deng, Baoqing Ren, Jun‐Tong Chen, Shenghan Gao, Hengchang Wang, Xu Zhang, Hongtao Guo, Hang Sun
article en
2 citations

Abstract

Dasiphora fruticosa (Rosaceae), commonly known as shrubby cinquefoil, is a flowering shrub of high ornamental value yet underutilized in East Asian landscapes. Given its broad elevational distribution range, D. fruticosa serves as an ideal model for studying genetic adaptations and speciation along elevation gradients. Here, we present a high-quality chromosome-scale assembly of D. fruticosa with a genome size of 249.23 Mb and a contig N50 length of 14.01 Mb. The genome sequence contains 32,613 protein-coding genes, of which 30,643 (93.96%) were functionally annotated. Compared to the published D. fruticosa genome sequence, our assembly demonstrates higher completeness and continuity. Furthermore, comparative genomic analyses provide insights into the phylogenetic relationship and high-altitude adaptation of D. fruticosa. Overall, our study offers a valuable genetic resource for both molecular and evolutionary research on shrubby cinquefoil.

Scientific DataVol. 11(1)
Kunming Institute of Botany (CN), Chinese Academy of Sciences (CN), Taiyuan Heavy Industry (China) (CN), Wuhan Botanical Garden (CN), Xi'an Jiaotong University (CN)
Zero hunger
Openalex Percentile: Top 35%
Genomics and Phylogenetic Studies
0.47
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A high-quality genome assembly of the shrubby cinquefoil (Dasiphora fruticosa) — Yanxia Sun, Tao Deng, et al. · Scientific Data (2024) | TGRS Research Map | TGRS