Complete chloroplast genome of endangered species <i>Dipterocarpus retusus</i> Blume (Dipterocarpaceae) and its phylogenetic implications

<i>Dipterocarpus retusus</i> Blume is an endangered species on the IUCN Red List. In this study, we reported the complete chloroplast (cp) genome of <i>D. retusus</i> (GenBank accession number: OP271853). The cp genome was 154,303 bp long, with a large single-copy (LSC) region of 85,586 bp and a small single-copy (SSC) region of 20,273 bp separated by a pair of inverted repeats (IRs) of 24,222 bp. It encodes 128 genes, including 84 protein-coding genes, 36 tRNA genes, and eight ribosomal RNA genes. We also reconstructed the cp genome phylogeny of <i>Dipterocarpus</i>, which indicated <i>D. retusus</i> was closely related with the sympatric species <i>D. gracilis</i>. This study may contribute valuable information to the phylogenetic relationships within the genus <i>Dipterocarpus</i>.

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Journal
Mitochondrial DNA Part B
Published
2024-08-30
DOI
https://doi.org/10.1080/23802359.2024.2387257
Primary Topic
Genomics and Phylogenetic Studies
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article
Field-Weighted Citation Impact
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article

Complete chloroplast genome of endangered species Dipterocarpus retusus Blume (Dipterocarpaceae) and its phylogenetic implications

Meng Yuan, Qin‐Qin Li, Yu‐Tian Tao, Zhong-Shuai Sun
Mitochondrial DNA Part B
Genomics and Phylogenetic Studies
article

Complete chloroplast genome of endangered species Dipterocarpus retusus Blume (Dipterocarpaceae) and its phylogenetic implications

Meng Yuan, Qin‐Qin Li, Yu‐Tian Tao, Zhong-Shuai Sun
article en

Abstract

<i>Dipterocarpus retusus</i> Blume is an endangered species on the IUCN Red List. In this study, we reported the complete chloroplast (cp) genome of <i>D. retusus</i> (GenBank accession number: OP271853). The cp genome was 154,303 bp long, with a large single-copy (LSC) region of 85,586 bp and a small single-copy (SSC) region of 20,273 bp separated by a pair of inverted repeats (IRs) of 24,222 bp. It encodes 128 genes, including 84 protein-coding genes, 36 tRNA genes, and eight ribosomal RNA genes. We also reconstructed the cp genome phylogeny of <i>Dipterocarpus</i>, which indicated <i>D. retusus</i> was closely related with the sympatric species <i>D. gracilis</i>. This study may contribute valuable information to the phylogenetic relationships within the genus <i>Dipterocarpus</i>.

Mitochondrial DNA Part BVol. 9(9)
Shanghai Normal University (CN), Taizhou University (CN)
National Natural Science Foundation of China
Life in Land
Openalex Percentile: Top 87%
Genomics and Phylogenetic Studies
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