Exploring the interaction between derivatives of urea with resorcinol-based acridinedione dyes by employing fluorescence methods and molecular docking approach

• Manuscript deals with photophysical studies of resorcinol based acridinedione dye with urea derivatives in aqueous solution. • Symmetrical and unsymmetrical urea derivatives govern the excited state characteristics of the fluorophore. • Hydrogen-bonding in association with hydrophobic interactions coexist between dye and urea derivatives. • Molecular docking studies justify the binding stabity of dye-urea complex in the presence of host molecule, protein. Akyl urea derivatives, either symmetrical or unsymmetrical in nature possessing a free N-H or N-alkyl moieties in the molecular framework of urea governs the excited state properties of acridinedione dye (ADR1) which is a resorcinol-based derivative. Fluorescence enhancement (FE) of ADR1 dye is observed on the addition of unsymmetrical urea derivatives, whereas a decrease in the fluorescence intensity resulted upon the addition of symmetrical urea derivatives. The nature of the urea derivatives controls the suppression of photoinduced electron transfer (PET) via space, which is the cause of the FE. FQ results from the donor and acceptor moieties of ADR1 dye promoting the PET process. Urea (U), symmetrical and unsymmetrical urea derivatives (except Tetramethyl urea (TMU)) results no significant shift of the localized excited (LE) state emission of ADR1 dye. Studies of the ADR1 dye’s fluorescence lifetime in the presence of urea compounds show a significant increase in lifetime. This phenomenon is explained by a significant difference in the hydrogen-bonding (HB) pattern, which causes variation in the microenvironment created by the solute molecules in the aqueous phase. Both the hydrophobic effects of the alkyl group substituents in the urea molecular framework and the HB interactions between the solute and solvent influence the excited state features of ADR1 dye. Further, the role of urea derivatives and ADR1 dye (both are considered as competitive guest molecules) energetics and molecular interactions were studied in the presence of host molecule, Human Serum Albumin (HSA). The binding energy (BE) and several bimolecular interactions driven by urea derivatives in the presence of ADR1-HSA complex in comparison with that of urea derivatives-HSA complex were investigated by molecular docking (Mol.Doc) methodology. Incorporating theoretical research along with steady state and time-resolved fluorescence investigations proved to be an effective method to evaluate the interactions of competing solutes comprising both hydrophobic and HB functional groups.

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Journal
Results in Chemistry
Published
2024-08-30
DOI
https://doi.org/10.1016/j.rechem.2024.101746
Citations
1
Primary Topic
Protein Interaction Studies and Fluorescence Analysis
Type
article
Field-Weighted Citation Impact
0.23

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article

Exploring the interaction between derivatives of urea with resorcinol-based acridinedione dyes by employing fluorescence methods and molecular docking approach

Sangeetha Murugan Sreedevi, Nadavala Siva Kumar, R. Kumaran, Namasivayam Dhenadhayalan et al.
1 citations
Results in Chemistry
Protein Interaction Studies and Fluorescence Analysis
0.23
article

Exploring the interaction between derivatives of urea with resorcinol-based acridinedione dyes by employing fluorescence methods and molecular docking approach

Sangeetha Murugan Sreedevi, Nadavala Siva Kumar, R. Kumaran, Namasivayam Dhenadhayalan, P. Tamizhdurai, Salwa B. Alreshaidan, Naif Alarifi, Seba Merin Vinod, Anju Krishnan, Ahmed S. Al‐Fatesh, Somasundaram Gayathri, Omer Bellahwel, Ravichandran Keerthiga
article en
1 citations

Abstract

• Manuscript deals with photophysical studies of resorcinol based acridinedione dye with urea derivatives in aqueous solution. • Symmetrical and unsymmetrical urea derivatives govern the excited state characteristics of the fluorophore. • Hydrogen-bonding in association with hydrophobic interactions coexist between dye and urea derivatives. • Molecular docking studies justify the binding stabity of dye-urea complex in the presence of host molecule, protein. Akyl urea derivatives, either symmetrical or unsymmetrical in nature possessing a free N-H or N-alkyl moieties in the molecular framework of urea governs the excited state properties of acridinedione dye (ADR1) which is a resorcinol-based derivative. Fluorescence enhancement (FE) of ADR1 dye is observed on the addition of unsymmetrical urea derivatives, whereas a decrease in the fluorescence intensity resulted upon the addition of symmetrical urea derivatives. The nature of the urea derivatives controls the suppression of photoinduced electron transfer (PET) via space, which is the cause of the FE. FQ results from the donor and acceptor moieties of ADR1 dye promoting the PET process. Urea (U), symmetrical and unsymmetrical urea derivatives (except Tetramethyl urea (TMU)) results no significant shift of the localized excited (LE) state emission of ADR1 dye. Studies of the ADR1 dye’s fluorescence lifetime in the presence of urea compounds show a significant increase in lifetime. This phenomenon is explained by a significant difference in the hydrogen-bonding (HB) pattern, which causes variation in the microenvironment created by the solute molecules in the aqueous phase. Both the hydrophobic effects of the alkyl group substituents in the urea molecular framework and the HB interactions between the solute and solvent influence the excited state features of ADR1 dye. Further, the role of urea derivatives and ADR1 dye (both are considered as competitive guest molecules) energetics and molecular interactions were studied in the presence of host molecule, Human Serum Albumin (HSA). The binding energy (BE) and several bimolecular interactions driven by urea derivatives in the presence of ADR1-HSA complex in comparison with that of urea derivatives-HSA complex were investigated by molecular docking (Mol.Doc) methodology. Incorporating theoretical research along with steady state and time-resolved fluorescence investigations proved to be an effective method to evaluate the interactions of competing solutes comprising both hydrophobic and HB functional groups.

Results in ChemistryVol. 11
King Abdulaziz City for Science and Technology (SA), King Saud University (SA), Department of Biotechnology (IN), Sathyabama Institute of Science and Technology (IN), SASTRA University (IN)
King Saud University
Openalex Percentile: Top 43%
Protein Interaction Studies and Fluorescence Analysis
0.23
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