Differentially expressed circular RNA profiles and comprehensive analysis of circRNA-miRNA-mRNA regulatory network in microsatellite instability-high endometrial cancer
The clinical benefit of anti-programmed cell death protein 1 (PD-1)-based immunotherapy among patients with microsatellite instable (MSI) endometrial cancer (EC) precedes that of microsatellite stable (MSS) EC, the mechanisms of which have not been fully understood. Circular RNAs (circRNAs) were reported to modulate immune evasion in several types of malignancies, while their roles in the immune regulation in EC remain largely unknown. Here, we conducted circRNA array analysis and mRNA-Sequencing of 10 MSI EC samples and 10 MSS EC samples and identified 1083 differentially expressed circRNAs (DE-circRNAs) and 864 differentially expressed mRNAs, based on which we constructed a circRNA-miRNA-mRNA comprehensive network consisting of 35 DE-circRNAs, 56 predicted miRNAs and 24 differentially expressed mRNAs. Finally, we confirmed hsa_circ_0058230 being positively correlated with CD8+ T cells infiltration, suggesting that it might take a part in anti-tumor immunity in EC.
Authors
- Shuzhong Yao (ORCID: https://orcid.org/0000-0002-5145-5705)
- Xueyuan Zhao
- Hongye Jiang (ORCID: https://orcid.org/0000-0002-7550-2721)
- Weijia Wen (ORCID: https://orcid.org/0000-0003-3784-7494)
- Linna Chen
- Wei Wang (ORCID: https://orcid.org/0000-0002-1614-0759)
- Chunyu Zhang (ORCID: https://orcid.org/0000-0003-1935-6907)
- Yuan Li (ORCID: https://orcid.org/0000-0002-1683-6801)
- Jia Yan (ORCID: https://orcid.org/0000-0002-6203-0016)
Institutions
- Sun Yat-sen University (CN)
- The First Affiliated Hospital, Sun Yat-sen University (CN)
Publication Details
- Journal
- Genomics
- Published
- 2024-08-30
- DOI
- https://doi.org/10.1016/j.ygeno.2024.110931
- Citations
- 1
- Primary Topic
- Circular RNAs in diseases
- Type
- article
- Field-Weighted Citation Impact
- 0.23
Funders
- National Natural Science Foundation of China
- China Postdoctoral Science Foundation
- Medical Science and Technology Foundation of Guangdong Province
- Guangzhou Municipal Science and Technology Project
- Key Technologies Research and Development Program
- Science and Technology Planning Project of Guangdong Province
- Basic and Applied Basic Research Foundation of Guangdong Province