Genome-wide identification and characterization of the sucrose invertase gene family in <i>Hemerocallis citrina</i>

Through software analysis, 35 sucrose invertases were identified from the <i>H. citrina</i> genome and named HcINV1-HcINV35; these enzymes belong to three subfamilies: cell wall invertases, vacuolar invertases, and chloroplast invertases. The amino acid composition, motif types, promoter composition, gene structure, protein physicochemical properties, gene chromosomal localization, and evolutionary adaptability of daylily invertases were determined; these results provided a comprehensive understanding of daylily invertases. The transcriptome expression profile combined with fluorescence quantitative reverse transcription-polymerase chain reaction (RT‒PCR) analysis suggested that almost all daylily invertase genes were expressed in flower organs, but even genes belonging to the same subfamily did not exhibit the same expression pattern at different developmental stages, suggesting that there may be redundancy or dissimilation in the function of daylily sucrose invertases.

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Publication Details

Journal
PeerJ
Published
2024-08-29
DOI
https://doi.org/10.7717/peerj.17999
Citations
1
Primary Topic
Agriculture and Biological Studies
Type
article
Field-Weighted Citation Impact
1.34

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article

Genome-wide identification and characterization of the sucrose invertase gene family in Hemerocallis citrina

Guangying Ma, Lupeng Xie, Ziwei Zuo, Jiao Han
1 citations
PeerJ
Agriculture and Biological Studies
1.34
article

Genome-wide identification and characterization of the sucrose invertase gene family in Hemerocallis citrina

Guangying Ma, Lupeng Xie, Ziwei Zuo, Jiao Han
article en
1 citations

Abstract

Through software analysis, 35 sucrose invertases were identified from the <i>H. citrina</i> genome and named HcINV1-HcINV35; these enzymes belong to three subfamilies: cell wall invertases, vacuolar invertases, and chloroplast invertases. The amino acid composition, motif types, promoter composition, gene structure, protein physicochemical properties, gene chromosomal localization, and evolutionary adaptability of daylily invertases were determined; these results provided a comprehensive understanding of daylily invertases. The transcriptome expression profile combined with fluorescence quantitative reverse transcription-polymerase chain reaction (RT‒PCR) analysis suggested that almost all daylily invertase genes were expressed in flower organs, but even genes belonging to the same subfamily did not exhibit the same expression pattern at different developmental stages, suggesting that there may be redundancy or dissimilation in the function of daylily sucrose invertases.

PeerJVol. 12
ZheJiang Academy of Agricultural Sciences (CN)
Natural Science Foundation of Zhejiang Province
Life in Land
Openalex Percentile: Top 15%
Agriculture and Biological Studies
1.34
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