Comparing Graph Sample and Aggregation (SAGE) and Graph Attention Networks in the Prediction of Drug-Gene Associations of Extended-Spectrum Beta-Lactamases in Periodontal Infections and Resistance
Compared to ESBLs, both GCN and Graph SAGE demonstrate excellent performance with accuracy, precision, recall, and an F1-score of 0.94. These results indicate that GCN and Graph SAGE are highly effective in predicting drug-gene associations related to ESBLs. GCN and Graph SAGE outperform GAT in predicting drug-gene associations for ESBLs. Improvements include data augmentation, regularization, and cross-validation. Ethical considerations, fairness, and open-source implementations are crucial for future research in precision periodontal treatment.
Authors
- Raghavendra Vamsi Anegundi (ORCID: https://orcid.org/0000-0002-8269-088X)
- Deepavalli Arumuganainar (ORCID: https://orcid.org/0000-0002-1642-5287)
- Pradeep Kumar Yadalam (ORCID: https://orcid.org/0000-0002-6653-4123)
- Johnisha Harris
Institutions
- Saveetha University (IN)
Publication Details
- Journal
- Cureus
- Published
- 2024-08-29
- DOI
- https://doi.org/10.7759/cureus.68082
- Citations
- 4
- Primary Topic
- Machine Learning in Bioinformatics
- Type
- article
- Field-Weighted Citation Impact
- 0.94