Comparing Graph Sample and Aggregation (SAGE) and Graph Attention Networks in the Prediction of Drug-Gene Associations of Extended-Spectrum Beta-Lactamases in Periodontal Infections and Resistance

Compared to ESBLs, both GCN and Graph SAGE demonstrate excellent performance with accuracy, precision, recall, and an F1-score of 0.94. These results indicate that GCN and Graph SAGE are highly effective in predicting drug-gene associations related to ESBLs. GCN and Graph SAGE outperform GAT in predicting drug-gene associations for ESBLs. Improvements include data augmentation, regularization, and cross-validation. Ethical considerations, fairness, and open-source implementations are crucial for future research in precision periodontal treatment.

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Publication Details

Journal
Cureus
Published
2024-08-29
DOI
https://doi.org/10.7759/cureus.68082
Citations
4
Primary Topic
Machine Learning in Bioinformatics
Type
article
Field-Weighted Citation Impact
0.94
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article

Comparing Graph Sample and Aggregation (SAGE) and Graph Attention Networks in the Prediction of Drug-Gene Associations of Extended-Spectrum Beta-Lactamases in Periodontal Infections and Resistance

Raghavendra Vamsi Anegundi, Deepavalli Arumuganainar, Pradeep Kumar Yadalam, Johnisha Harris
4 citations
Cureus
Machine Learning in Bioinformatics
0.94
article

Comparing Graph Sample and Aggregation (SAGE) and Graph Attention Networks in the Prediction of Drug-Gene Associations of Extended-Spectrum Beta-Lactamases in Periodontal Infections and Resistance

Raghavendra Vamsi Anegundi, Deepavalli Arumuganainar, Pradeep Kumar Yadalam, Johnisha Harris
article en
4 citations

Abstract

Compared to ESBLs, both GCN and Graph SAGE demonstrate excellent performance with accuracy, precision, recall, and an F1-score of 0.94. These results indicate that GCN and Graph SAGE are highly effective in predicting drug-gene associations related to ESBLs. GCN and Graph SAGE outperform GAT in predicting drug-gene associations for ESBLs. Improvements include data augmentation, regularization, and cross-validation. Ethical considerations, fairness, and open-source implementations are crucial for future research in precision periodontal treatment.

CureusVol. 16(8)
Saveetha University (IN)
Zero hunger
Openalex Percentile: Top 25%
Machine Learning in Bioinformatics
0.94
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Comparing Graph Sample and Aggregation (SAGE) and Graph Attention Networks in the Prediction of Drug-Gene Associations of Extended-Spectrum Beta-Lactamases in Periodontal Infections and Resistance — Raghavendra Vamsi Anegundi, Deepavalli Arumuganainar, et al. · Cureus (2024) | TGRS Research Map | TGRS