Dense and Persistent Odor Representations in the Olfactory Bulb of Awake Mice
Recording and analysis of neural activity are often biased toward detecting sparse subsets of highly active neurons, masking important signals carried in low-magnitude and variable responses. To investigate the contribution of seemingly noisy activity to odor encoding, we used mesoscale calcium imaging from mice of both sexes to record odor responses from the dorsal surface of bilateral olfactory bulbs (OBs). The outer layer of the mouse OB is comprised of dendrites organized into discrete "glomeruli," which are defined by odor receptor-specific sensory neuron input. We extracted activity from a large population of glomeruli and used logistic regression to classify odors from individual trials with high accuracy. We then used add-in and dropout analyses to determine subsets of glomeruli necessary and sufficient for odor classification. Classifiers successfully predicted odor identity even after excluding sparse, highly active glomeruli, indicating that odor information is redundantly represented across a large population of glomeruli. Additionally, we found that random forest (RF) feature selection informed by Gini inequality (RF Gini impurity, RFGI) reliably ranked glomeruli by their contribution to overall odor classification. RFGI provided a measure of "feature importance" for each glomerulus that correlated with intuitive features like response magnitude. Finally, in agreement with previous work, we found that odor information persists in glomerular activity after the odor offset. Together, our findings support a model of OB odor coding where sparse activity is sufficient for odor identification, but information is widely, redundantly available across a large population of glomeruli, with each glomerulus representing information about more than one odor.
Authors
- Cameron Smith (ORCID: https://orcid.org/0000-0002-2079-4667)
- Ankit Patel (ORCID: https://orcid.org/0000-0001-9678-496X)
- Benjamin Russell Arenkiel (ORCID: https://orcid.org/0000-0001-9047-2420)
- Stephen J. Moss (ORCID: https://orcid.org/0000-0002-5150-8926)
- Paul J. Pfaffinger (ORCID: https://orcid.org/0000-0003-3108-7797)
- Saket Navlakha (ORCID: https://orcid.org/0000-0002-5505-9718)
- Jacob Reimer (ORCID: https://orcid.org/0000-0003-4364-8846)
- Ryan Kroeger
- Delaram Pirhayati
Institutions
- Oregon Health & Science University (US)
- Baylor College of Medicine (US)
- Cold Spring Harbor Laboratory (US)
- Baylor Genetics (US)
- Rice University (US)
Publication Details
- Journal
- Journal of Neuroscience
- Published
- 2024-08-26
- DOI
- https://doi.org/10.1523/jneurosci.0116-24.2024
- Primary Topic
- Olfactory and Sensory Function Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Institutes of Health
- National Institute on Deafness and Other Communication Disorders
- National Institute of Neurological Disorders and Stroke