Machine learning approaches to detect hepatocyte chromatin alterations from iron oxide nanoparticle exposure

This study focuses on developing machine learning models to detect subtle alterations in hepatocyte chromatin organization due to Iron (II, III) oxide nanoparticle exposure, hypothesizing that exposure will significantly alter chromatin texture. A total of 2000 hepatocyte nuclear regions of interest (ROIs) from mouse liver tissue were analyzed, and for each ROI, 5 different parameters were calculated: Long Run Emphasis, Short Run Emphasis, Run Length Nonuniformity, and 2 wavelet coefficient energies obtained after the discrete wavelet transform. These parameters served as input for supervised machine learning models, specifically random forest and gradient boosting classifiers. The models demonstrated relatively robust performance in distinguishing hepatocyte chromatin structures belonging to the group exposed to IONPs from the controls. The study's findings suggest that iron oxide nanoparticles induce substantial changes in hepatocyte chromatin distribution and underscore the potential of AI techniques in advancing hepatocyte evaluation in physiological and pathological conditions.

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Publication Details

Journal
Scientific Reports
Published
2024-08-23
DOI
https://doi.org/10.1038/s41598-024-70559-4
Citations
4
Primary Topic
Gene expression and cancer classification
Type
article
Field-Weighted Citation Impact
0.94

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article

Machine learning approaches to detect hepatocyte chromatin alterations from iron oxide nanoparticle exposure

Peter R. Corridon, Igor Pantić, Ljubiša Bojić, Jovana Paunović et al.
4 citations
Scientific Reports
Gene expression and cancer classification
0.94
article

Machine learning approaches to detect hepatocyte chromatin alterations from iron oxide nanoparticle exposure

Peter R. Corridon, Igor Pantić, Ljubiša Bojić, Jovana Paunović, Danijela Vučević, Svetlana Valjarević, Tatjana S. Radosavljević, Jelena Cumic
article en
4 citations

Abstract

This study focuses on developing machine learning models to detect subtle alterations in hepatocyte chromatin organization due to Iron (II, III) oxide nanoparticle exposure, hypothesizing that exposure will significantly alter chromatin texture. A total of 2000 hepatocyte nuclear regions of interest (ROIs) from mouse liver tissue were analyzed, and for each ROI, 5 different parameters were calculated: Long Run Emphasis, Short Run Emphasis, Run Length Nonuniformity, and 2 wavelet coefficient energies obtained after the discrete wavelet transform. These parameters served as input for supervised machine learning models, specifically random forest and gradient boosting classifiers. The models demonstrated relatively robust performance in distinguishing hepatocyte chromatin structures belonging to the group exposed to IONPs from the controls. The study's findings suggest that iron oxide nanoparticles induce substantial changes in hepatocyte chromatin distribution and underscore the potential of AI techniques in advancing hepatocyte evaluation in physiological and pathological conditions.

Scientific ReportsVol. 14(1)
Ben-Gurion University of the Negev (IL), Khalifa University of Science and Technology (AE), University of Belgrade (RS), Univerzitetski Klinički Centar Srbije (RS), Zemun Hospital (RS), University of Haifa (IL)
Khalifa University of Science, Technology and Research, Science Fund of the Republic of Serbia
Openalex Percentile: Top 26%
Gene expression and cancer classification
0.94
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