Multi-Stage Feature Fusion of Multispectral and SAR Satellite Images for Seasonal Crop-Type Mapping at Regional Scale Using an Adapted 3D U-Net Model

Earth observation missions such as Sentinel and Landsat support the large-scale identification of agricultural crops by providing free radar and multispectral satellite images. The extraction of representative image information as well as the combination of different image sources for improved feature selection still represent a major challenge in the field of remote sensing. In this paper, we propose a novel three-dimensional (3D) deep learning U-Net model to fuse multi-level image features from multispectral and synthetic aperture radar (SAR) time series data for seasonal crop-type mapping at a regional scale. For this purpose, we used a dual-stream U-Net with a 3D squeeze-and-excitation fusion module applied at multiple stages in the network to progressively extract and combine multispectral and SAR image features. Additionally, we introduced a distinctive method for generating patch-based multitemporal multispectral composites by selective image sampling within a 14-day window, prioritizing those with minimal cloud cover. The classification results showed that the proposed network provided the best overall accuracy (94.5%) compared to conventional two-dimensional (2D) and three-dimensional U-Net models (2D: 92.6% and 3D: 94.2%). Our network successfully learned multi-modal dependencies between the multispectral and SAR satellite images, leading to improved field mapping of spectrally similar and heterogeneous classes while mitigating the limitations imposed by persistent cloud coverage. Additionally, the feature representations extracted by the proposed network demonstrated their transferability to a new cropping season, providing a reliable mapping of spatio-temporal crop type patterns.