CGD: a multi-omics database for <i>Chrysanthemum</i> genomic and biological research
Asteraceae is the largest family of dicotyledons and includes <i>Chrysanthemum</i> and <i>Helianthus</i>, two important genera of ornamental plants. The genus <i>Chrysanthemum</i> consists of more than 30 species and contains many economically important ornamental, medicinal, and industrial plants. To more effectively promote <i>Chrysanthemum</i> research, we constructed the CGD, a <i>Chrysanthemum</i> genome database containing a large amount of data and useful tools. The CGD hosts well-assembled reference genome data for six <i>Chrysanthemum</i> species. These genomic data were fully annotated by comparison with various protein and domain data. Transcriptome data for nine different tissues, five flower developmental stages, and five treatments were subsequently added to the CGD. A fully functional 'RNA data' module was designed to provide complete and visual expression profile data. In addition, the CGD also provides many of the latest bioinformatics analysis tools, such as the efficient sgRNA search tool for <i>Chrysanthemum</i>. In conclusion, the CGD provides the latest, richest, and most complete multi-omics resources and powerful tools for <i>Chrysanthemum</i>. Collectively, the CGD will become the central gateway for <i>Chrysanthemum</i> genomics and genetic breeding research and will aid in the study of polyploid evolution.
Authors
- Jingxuan Ye
- Jinyu Jin (ORCID: https://orcid.org/0009-0008-4857-822X)
- Jing Zhang (ORCID: https://orcid.org/0000-0002-0068-3038)
- Peixue Liu (ORCID: https://orcid.org/0000-0002-9846-4721)
- Jing Tang (ORCID: https://orcid.org/0000-0002-6351-993X)
- Lingling Zhang (ORCID: https://orcid.org/0000-0001-5070-8523)
- Jiafu Jiang (ORCID: https://orcid.org/0000-0002-0078-8796)
- Aiping Song (ORCID: https://orcid.org/0000-0001-8981-2213)
- Shaocong Chen
- Sumei Chen (ORCID: https://orcid.org/0000-0003-3973-0505)
- Ye Liu (ORCID: https://orcid.org/0000-0001-9156-9515)
- Chun Wang (ORCID: https://orcid.org/0000-0002-9366-3668)
- Zhenxing Wang (ORCID: https://orcid.org/0000-0001-5102-7121)
- Fadi Chen
Institutions
- Nanjing Agricultural University (CN)
- Ministry of Agriculture (EE)
- Zhongshan Hospital (CN)
- Ministry of Agriculture and Rural Affairs (CN)
Publication Details
- Journal
- Horticulture Research
- Published
- 2024-08-21
- DOI
- https://doi.org/10.1093/hr/uhae238
- Citations
- 9
- Primary Topic
- Plant Gene Expression Analysis
- Type
- article
- Field-Weighted Citation Impact
- 2.10
Funders
- National Natural Science Foundation of China
- Government of Jiangsu Province