Expression of a mammalian RNA demethylase increases flower number and floral stem branching in <scp> <i>Arabidopsis thaliana</i> </scp>

RNA methylation plays a central regulatory role in plant biology and is a relatively new target for plant improvement efforts. In nearly all cases, perturbation of the RNA methylation machinery results in deleterious phenotypes. However, a recent landmark paper reported that transcriptome-wide use of the human RNA demethylase FTO substantially increased the yield of rice and potatoes. Here, we have performed the first independent replication of those results and demonstrated broader transferability of the trait, finding increased flower and fruit count in the model species <i>Arabidopsis thaliana</i>. We also performed RNA-seq of our FTO-transgenic plants, which we analyzed in conjunction with previously published datasets to detect several previously unrecognized patterns in the functional and structural classification of the upregulated and downregulated genes. From these, we present mechanistic hypotheses to explain these surprising results with the goal of spurring more widespread interest in this promising new approach to plant engineering.

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Publication Details

Journal
Plant Direct
Published
2024-08-01
DOI
https://doi.org/10.1002/pld3.70000
Citations
2
Primary Topic
Plant Molecular Biology Research
Type
article
Field-Weighted Citation Impact
1.20

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article

Expression of a mammalian RNA demethylase increases flower number and floral stem branching in Arabidopsis thaliana

Kasey Markel, Lucas Waldburger, Patrick M. Shih
2 citations
Plant Direct
Plant Molecular Biology Research
1.20
article

Expression of a mammalian RNA demethylase increases flower number and floral stem branching in Arabidopsis thaliana

Kasey Markel, Lucas Waldburger, Patrick M. Shih
article en
2 citations

Abstract

RNA methylation plays a central regulatory role in plant biology and is a relatively new target for plant improvement efforts. In nearly all cases, perturbation of the RNA methylation machinery results in deleterious phenotypes. However, a recent landmark paper reported that transcriptome-wide use of the human RNA demethylase FTO substantially increased the yield of rice and potatoes. Here, we have performed the first independent replication of those results and demonstrated broader transferability of the trait, finding increased flower and fruit count in the model species <i>Arabidopsis thaliana</i>. We also performed RNA-seq of our FTO-transgenic plants, which we analyzed in conjunction with previously published datasets to detect several previously unrecognized patterns in the functional and structural classification of the upregulated and downregulated genes. From these, we present mechanistic hypotheses to explain these surprising results with the goal of spurring more widespread interest in this promising new approach to plant engineering.

Plant DirectVol. 8(8)
Lawrence Berkeley National Laboratory (US), Joint Genome Institute (US), Innovative Genomics Institute (US), Joint BioEnergy Institute (US), University of California, Berkeley (US)
U.S. Department of Energy, Joint Genome Institute, Office of Science, Basic Energy Sciences, Lawrence Berkeley National Laboratory
Openalex Percentile: Top 17%
Plant Molecular Biology Research
1.20
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