HPC-T-Annotator: an HPC tool for de novo transcriptome assembly annotation
HPC-T-Annotator expedites homology-based annotation in de novo transcriptome assemblies. Its efficient parallelization strategy on HPC infrastructures significantly reduces computational load and execution times, enabling large-scale transcriptome analysis and comparison projects, while its intuitive graphical interface extends accessibility to users without IT skills.
Authors
- Paolo Bottoni (ORCID: https://orcid.org/0000-0003-4662-2019)
- Jessica Di Martino (ORCID: https://orcid.org/0000-0003-0505-4190)
- Tiziana Castrignanò (ORCID: https://orcid.org/0000-0002-0689-6720)
- Manuel Arcieri (ORCID: https://orcid.org/0000-0002-2312-7704)
- Franco Liberati
- Lorenzo Arcioni
Institutions
- Università degli Studi della Tuscia (IT)
- Sapienza University of Rome (IT)
- Technical University of Denmark (DK)
Publication Details
- Journal
- BMC Bioinformatics
- Published
- 2024-08-21
- DOI
- https://doi.org/10.1186/s12859-024-05887-3
- Citations
- 6
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 1.40