Identification of copper death-associated molecular clusters and immunological profiles for lumbar disc herniation based on the machine learning

Lumbar disc herniation (LDH) is a common clinical spinal disorder, yet its etiology remains unclear. We aimed to explore the role of cuproptosis-related genes (CRGs) and identify potential diagnostic biomarkers. Our analysis involved interrogating the GSE124272 and GSE150408 datasets for differential gene expression profiles associated with CRGs and immune characteristics. Molecular clustering was performed on LDH samples, followed by expression and immune infiltration analyses. Using the WGCNA algorithm, specific genes within CRG clusters were identified. After selecting the most predictive genes from the optimal model, four machine learning models were constructed and validated. This study identified nine CRGs associated with copper-regulated cell death. Two copper-containing molecular clusters linked to death were detected in LDH samples. Elevated expression and immune infiltration levels were found in LDH patients, particularly in CRG cluster C2. Utilizing XGB, five genes were identified for constructing a diagnostic model, achieving an area under the curve values of 0.715. In conclusion, this research provides valuable insights into the association between LDH and copper-regulated cell death, alongside proposing a promising predictive model.

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Publication Details

Journal
Scientific Reports
Published
2024-08-20
DOI
https://doi.org/10.1038/s41598-024-69700-0
Citations
4
Primary Topic
Spine and Intervertebral Disc Pathology
Type
article
Field-Weighted Citation Impact
1.70

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article

Identification of copper death-associated molecular clusters and immunological profiles for lumbar disc herniation based on the machine learning

Yetong Jiang, Xin Jin, Hong-Gen Du, Ya Wen et al.
4 citations
Scientific Reports
Spine and Intervertebral Disc Pathology
1.70
article

Identification of copper death-associated molecular clusters and immunological profiles for lumbar disc herniation based on the machine learning

Yetong Jiang, Xin Jin, Hong-Gen Du, Ya Wen, Qianqian Liu, Haipeng Xu
article en
4 citations

Abstract

Lumbar disc herniation (LDH) is a common clinical spinal disorder, yet its etiology remains unclear. We aimed to explore the role of cuproptosis-related genes (CRGs) and identify potential diagnostic biomarkers. Our analysis involved interrogating the GSE124272 and GSE150408 datasets for differential gene expression profiles associated with CRGs and immune characteristics. Molecular clustering was performed on LDH samples, followed by expression and immune infiltration analyses. Using the WGCNA algorithm, specific genes within CRG clusters were identified. After selecting the most predictive genes from the optimal model, four machine learning models were constructed and validated. This study identified nine CRGs associated with copper-regulated cell death. Two copper-containing molecular clusters linked to death were detected in LDH samples. Elevated expression and immune infiltration levels were found in LDH patients, particularly in CRG cluster C2. Utilizing XGB, five genes were identified for constructing a diagnostic model, achieving an area under the curve values of 0.715. In conclusion, this research provides valuable insights into the association between LDH and copper-regulated cell death, alongside proposing a promising predictive model.

Scientific ReportsVol. 14(1)
Zhejiang Chinese Medical University (CN), First Hospital of Lanzhou University (CN), Lanzhou University (CN)
Natural Science Foundation of Zhejiang Province
Good health and well-being
Openalex Percentile: Top 16%
Spine and Intervertebral Disc Pathology
1.70
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Identification of copper death-associated molecular clusters and immunological profiles for lumbar disc herniation based on the machine learning — Yetong Jiang, Xin Jin, et al. · Scientific Reports (2024) | TGRS Research Map | TGRS